Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq6 145 5e-30
seq1 127 1e-24
>seq6
Length=2247897
Score = 145 bits (160), Expect = 5e-30
Identities = 160/212 (75%), Gaps = 1/212 (0%)
Strand=Plus/Minus
Query 44128 CACC-AGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGT 44186
|||| || ||||| || |||||| |||||||| || || | || ||| |||| |
Sbjct 300513 CACCGAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCT 300454
Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246
| |||||||| || || ||||||||||||||||| || | || | |||||||| |||
Sbjct 300453 CGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCCT 300394
Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|||||| ||||| | | |||||||| | || |||||||| | || |||||||
Sbjct 300393 GAATCTTCGCCTTCACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCT 300334
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
| || |||||||||||||||||||| ||||||
Sbjct 300333 TCCCAGTGAGGGTCTTCACGAAGATCTGCATG 300302
Score = 136 bits (150), Expect = 3e-27
Identities = 160/213 (75%), Gaps = 5/213 (2%)
Strand=Plus/Minus
Query 44128 CACCA-GGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGT 44186
||||| ||||||| ||||||||||| ||||| ||||| || | || ||| |||| |
Sbjct 301586 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCT 301527
Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246
| |||||||| || || || || | |||||||| || | ||| | |||||||| |||
Sbjct 301526 CGAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 301467
Query 44247 TTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304
|||||| ||| || ||| | || ||||| | || || ||||||| ||| || ||
Sbjct 301466 GAATCTTCGCCTTGACATTGT--CGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGT 301409
Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| |||||||||||||| || ||||| |||||
Sbjct 301408 CTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 301376
Score = 125 bits (138), Expect = 5e-24
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
|||||| || ||||| || |||| || ||| |||| || |||||||| || || ||
Sbjct 301063 CTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAA 301004
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
|||||| |||||||| || | || | || ||||| || |||||| ||||| |
Sbjct 301003 GATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTCACGTT 300944
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||| | || || ||||| | |||||||||||| |||||||||||||| ||
Sbjct 300943 ATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGAC 300884
Query 44326 GAAGATTTGCAT 44337
||| ||||||||
Sbjct 300883 GAAAATTTGCAT 300872
Score = 109 bits (120), Expect = 4e-19
Identities = 140/193 (73%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
|||||| || ||||| || || | || ||| |||| || |||||||| || || ||
Sbjct 300781 CTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 300722
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
|||||| |||||||| || | || | || ||||| ||| ||||| ||| | |
Sbjct 300721 GATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 300662
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||| | || |||||||| | ||| ||||||||||| || | ||||||||
Sbjct 300661 ATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTCTTCAC 300602
Query 44326 GAAGATTTGCATG 44338
|||||| ||||||
Sbjct 300601 GAAGATCTGCATG 300589
>seq1
Length=3258266
Score = 127 bits (140), Expect = 1e-24
Identities = 153/208 (74%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 44130 CCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCA 44189
|||| || || |||||||| || || ||||||||||| | ||| ||| |||| ||||
Sbjct 2272928 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2272869
Query 44190 GCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTA 44249
||||| || ||||| |||| || ||||| || | || | |||||||| || |
Sbjct 2272868 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAA 2272809
Query 44250 TCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTC 44309
||||| ||||| | | || ||||| | || || ||||||| ||| || ||||| |
Sbjct 2272808 TCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGC 2272749
Query 44310 CCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| ||||||||||| |||||||| |||||
Sbjct 2272748 CTGTGAGGGTCTTGACGAAGATCTGCAT 2272721
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||||||||| |||||| ||||||||||| |||| || || | || ||
Sbjct 2272701 ACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCG 2272642
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || ||||| || | ||||| ||||| | || | || ||||| |||
Sbjct 2272641 AGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGG 2272582
Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| |||| | || | || ||||||| || || ||||||| || || |||||
Sbjct 2272581 ATCTTC-GCTTTGACATTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTT 2272523
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || ||||| ||||| ||||| |||||
Sbjct 2272522 GCCAGTCAGGGTTTTCACAAAGATCTGCAT 2272493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990338576638
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |