Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6 168 2e-36 seq1 145 2e-29 seq8 84.2 5e-11 >seq6 Length=2247897 Score = 168 bits (186), Expect = 2e-36 Identities = 159/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || |||||||||||||||||||| || ||| Sbjct 300306 CAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTTCGGAC 300365 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || |||||||||||||| ||||||||||| || |||||||| Sbjct 300366 ACCATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAAGGAATCCCCCCCGACCAGCAG 300425 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || |||||||| || || | || ||| | || |||||| || Sbjct 300426 CGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATAACATC 300485 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || || || || || ||||| Sbjct 300486 CAGAAGGAGTCGACCCTTCATCT 300508 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || || ||||| || |||||||| || || ||| Sbjct 300875 CAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCTGAC 300934 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||| || || || || || || ||||||||||| Sbjct 300935 ACGATCGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAGCAG 300994 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || ||||||||||| || | |||||| |||| |||||| | Sbjct 300995 CGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACTATAACATT 301054 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||||| || Sbjct 301055 CAGAAGGAGTCCACCTTGCATCTCGT 301080 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || |||||||| |||||||| || || ||| Sbjct 301103 CAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAGTCGTCTGAC 301162 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||||||||||||| || || ||||| || |||||||| Sbjct 301163 ACGATCGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAGCAG 301222 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || || ||||| |||||| | |||||| | || || || || Sbjct 301223 CGCCTCATTTTCGCTGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAATATC 301282 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || || || || || ||||| Sbjct 301283 CAGAAGGAGTCGACTCTTCATCT 301305 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || ||||| |||||||| ||||||||||| || ||| Sbjct 300593 CAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATCTGAC 300652 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 300653 ACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 300712 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || |||||||| || || | || ||| | || |||||| | Sbjct 300713 CGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTATAACATT 300772 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 300773 CAGAAGGAGTCGACCCTCCAT 300793 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || ||||| || ||||| || || ||| Sbjct 301379 CAGATCTTTGTCAAGACCCTCACGGGTAAGACAATCACGCTGGAGGTCGAGTCTTCGGAC 301438 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| ||||| || ||||| |||||||| Sbjct 301439 ACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCAGCAG 301498 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || |||||||| || || | || || | || || || || Sbjct 301499 CGCCTCATTTTCGCGGGCAAGCAGCTCGAGGACGGTCGCACCCTGTCTGACTACAATATC 301558 Query 178104 CAAAAAGA 178111 || || || Sbjct 301559 CAGAAGGA 301566 >seq1 Length=3258266 Score = 145 bits (160), Expect = 2e-29 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||| | || || || |||||||| |||||||| || || ||| Sbjct 2272211 CAGATTTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTCGGAC 2272270 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || |||||||||||||| ||||| || ||||| ||||||||| Sbjct 2272271 ACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCAGCAA 2272330 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| ||||| ||| | || ||||| | ||||| ||||||| || | Sbjct 2272331 CGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAATATT 2272390 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || |||| |||| Sbjct 2272391 CAGAAAGAGTCTACTTTGCACCTTG 2272415 Score = 140 bits (154), Expect = 8e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || ||||| || || ||||| || ||| Sbjct 2271929 CAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCGGAC 2271988 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| || || |||||||| |||||||| Sbjct 2271989 ACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAG 2272048 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || |||||||| || ||||| | || ||| ||||||| || || Sbjct 2272049 CGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCCGATTACAATATC 2272108 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 2272109 CAGAAGGAGTCTACCCTTCACCTTG 2272133 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || |||||||| || || ||||| | ||||| || || ||| Sbjct 2272724 CAGATCTTCGTCAAGACCCTCACAGGCAAGACAATCACGTTGGAGGTAGAGTCTTCGGAC 2272783 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||||| ||||| ||||| ||||| |||||||||||| Sbjct 2272784 ACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAGCAA 2272843 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || || | || || || | || ||| | ||||| ||| | Sbjct 2272844 CGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACAACATT 2272903 Query 178104 CAAAAAGA 178111 || ||||| Sbjct 2272904 CAGAAAGA 2272911 Score = 98.7 bits (108), Expect = 2e-15 Identities = 88/110 (80%), Gaps = 3/110 (3%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| || || ||||| || || ||||||||||| |||||||| Sbjct 638571 AAAATGC---AGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAG 638515 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || ||||||||||| ||||||||| ||||| |||||||| ||||| Sbjct 638514 TCTTCTGACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGG 638465 >seq8 Length=1872454 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 178026 ATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085 ||||| || |||||||| || || || || |||||||| ||||||||||| || | || Sbjct 434559 ATCCCACCCGACCAGCAGCGCCTGATTTTTGCCGGAAAGCAGCTCGAAGACGGTCGCACC 434500 Query 178086 CTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||||| ||||||| || || || || || ||||| Sbjct 434499 CTCAGCGATTATAACATCCAAAAGGAGTCTACCCTCCACCTTGT 434456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730984080716