Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6 172 5e-38 seq1 138 1e-27 seq8 96.9 3e-15 >seq6 Length=2247897 Score = 172 bits (190), Expect = 5e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || |||||||| | || ||||||| ||| |||||||||||||||||||||||| Sbjct 301099 GCCTCCACGTAGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGAATGTTATAGTCGGA 301040 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| |||||||||||||| ||||| |||| |||||| ||||||| ||| Sbjct 301039 AAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGG 300980 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||| | | ||| | || || | ||| | | ||||| ||||| | Sbjct 300979 AATGCCCTCCTTAT-CTTGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGA 300921 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | ||| ||||| || ||||| || ||||| |||||||| ||||| Sbjct 300920 CCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 300872 Score = 156 bits (172), Expect = 4e-33 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41655 CCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGA 41714 ||| ||| || || ||||||||||||||||||||| || |||||||| |||| |||| Sbjct 300797 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 300738 Query 41715 GCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGA 41774 |||||||||| ||||| |||| |||||| ||||| | ||| | || |||||||||| || Sbjct 300737 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC-TGG 300679 Query 41775 TTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 | || || | ||| | | ||||| ||||||||||| | ||| ||||| || Sbjct 300678 ATCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTT 300619 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||| |||||| ||||| ||||||||| Sbjct 300618 CCAGTCAACGTCTTCACGAAGATCTGCATG 300589 Score = 141 bits (156), Expect = 9e-29 Identities = 161/212 (76%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 41653 CACCA-GATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 ||||| | || || |||||||||||||| || || ||||| || |||||||| |||| | Sbjct 301586 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCT 301527 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 ||||||||||||| ||||| || |||||||| ||||| | |||| | ||||||||| Sbjct 301526 CGAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCC- 301468 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| | || || | || | | | ||||| ||||| ||||||| ||| || || Sbjct 301467 TGAATCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTC 301408 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || ||||| || || |||||||| Sbjct 301407 TTACCCGTGAGGGTCTTGACAAAGATCTGCAT 301376 Score = 136 bits (150), Expect = 4e-27 Identities = 161/214 (75%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 41653 CACC-AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 |||| ||||| || || ||||||||| ||||||||||| || |||||||| |||| | Sbjct 300513 CACCGAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCT 300454 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 ||||||||||||| ||||| |||| ||||| ||||| | ||| | | ||||||||| Sbjct 300453 CGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCC- 300395 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| | || || | ||| | | ||||| ||||||||||| | || ||||| Sbjct 300394 TGAATCTTCGCCTTCACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTC 300335 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATGT 41864 || || || || ||||| ||||| |||||||||| Sbjct 300334 TTCCCAGTGAGGGTCTTCACGAAGATCTGCATGT 300301 >seq1 Length=3258266 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | || || || ||||| ||||||||| ||||| |||||||| Sbjct 2272719 CCGCCGCGAAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2272660 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || |||||||||||||| || || || ||||||||||| |||| || Sbjct 2272659 AGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGG 2272600 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| || | || |||| || | | |||||| |||||| || Sbjct 2272599 ATGCCCTCCTTATCC-TGGATCTTCGCTTTGACATTATCGATTGTGTCGGACGACTCGAC 2272541 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || ||||| || || || || |||||||| Sbjct 2272540 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 2272493 Score = 120 bits (132), Expect = 3e-22 Identities = 157/211 (74%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 41655 CCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGA 41714 ||||||| || |||||||| ||||||||||| || || || || ||||| |||| || | Sbjct 2272928 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2272869 Query 41715 GCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGA 41774 |||||||| || || |||||||| || ||||||| || | || ||||||| | ||| Sbjct 2272868 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGT-CTTGA 2272810 Query 41775 TTTTTTG-CTTCA-ACGA-CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 | || | ||||| | | || | ||||| ||||| ||||||| ||| || || | Sbjct 2272809 ATCTTCGCCTTCACATTATCG--ATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCT 2272752 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || ||||| ||||| |||||||| Sbjct 2272751 TGCCTGTGAGGGTCTTGACGAAGATCTGCAT 2272721 Score = 118 bits (130), Expect = 1e-21 Identities = 144/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| |||||||| || || |||||||| || ||| | || || | |||||| || ||||| Sbjct 2272399 CTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCGAA 2272340 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| || || ||||| | |||| | ||||||||| ||| | || || | ||| Sbjct 2272339 GATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCC-TGAATCTTCGCCTTCACGT 2272281 Query 41791 CGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | || |||||| ||||| ||||| | || ||||| || ||||||| ||||||| Sbjct 2272280 TGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGTCTTTA 2272221 Query 41850 CGAAAATCTGCATG 41863 |||||||||||||| Sbjct 2272220 CGAAAATCTGCATG 2272207 >seq8 Length=1872454 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || || || |||||| || |||||||| ||| | Sbjct 434438 CCACCGCGCAGACGAAGGACAAGGTGGAGGGTAGACTCCTTTTGGATGTTATAATCGCTG 434497 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 |||||||| |||| ||||||||||| ||||| || ||||||||||| ||||| Sbjct 434498 AGGGTGCGACCGTCTTCGAGCTGCTTTCCGGCAAAAATCAGGCGCTGCTGGTC 434550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303919096800