Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq3 93.3 9e-14
seq9 89.7 1e-12
>seq3
Length=3024150
Score = 93.3 bits (102), Expect = 9e-14
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505
|| ||||||||||| || | || ||| | ||||||||||| || || || ||||| |
Sbjct 1896453 CTGATTGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTTGCAGACCGTCTG 1896394
Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565
| |||| || ||| ||| || |||||| | | |||||||| | ||||||||
Sbjct 1896393 CTCATTGCCCTCGGTGGCGAAAAGCACTACAACGCGACAAACCCCTTCGACTTTATGGAC 1896334
Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609
| || || | || ||||||||||||||||| || ||||| ||
Sbjct 1896333 ATGATCTCTTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGT 1896290
>seq9
Length=1678725
Score = 89.7 bits (98), Expect = 1e-12
Identities = 177/255 (69%), Gaps = 8/255 (3%)
Strand=Plus/Plus
Query 282507 TCGGTCATGATCATCACATGACCGTATCTCAGAGAAGAAGTGTCTTTGTACACTTTACCG 282566
|| ||||| ||||||| || ||||| | || | || ||| | ||| |||| |
Sbjct 1435753 TCCGTCATAATCATCAACTGGCCGTACCGCAAACTCGAGATGTTCGTATACTCTTTGTTG 1435812
Query 282567 GTTTGAAGGCCCAAAATTTGTTTGA-GCGCGGTGATTTCTTCGTTCTTTGTGATACTTGC 282625
| || ||||||| ||| | |||| | | | ||||||||||||||| |||| || |
Sbjct 1435813 CTCTGGAGGCCCATAATCTTCTTGATGTTCTG-GATTTCTTCGTTCTTCATGAT-CTGGT 1435870
Query 282626 CACAGAT-GCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCATATCTCT 282684
|| | || ||||| ||||| |||| |||||||| || || || || ||| | | |
Sbjct 1435871 CATGCCTAGCTTCGCGCACGTTGAGCATTTTACCGCGAAGTGGGAAGACTCCAAAGTTAT 1435930
Query 282685 CGCGACCGACCACGGACAGTCCTGCAATTGCAAGTG--TTGCTGCGGAATCTCCCTCCGT 282742
|||| ||||| || || ||| |||| ||||| | ||| || |||||||| || ||
Sbjct 1435931 CGCGCCCGACGACACCCAATCCCGCAACAGCAAGGGCCTTG--GCAGAATCTCCTTCAGT 1435988
Query 282743 CAAGATGAGAGTACA 282757
| || ||||||||
Sbjct 1435989 GAGAATAAGAGTACA 1436003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057823810252820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |