Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 9e-14 seq9 89.7 1e-12 >seq3 Length=3024150 Score = 93.3 bits (102), Expect = 9e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || ||||||||||| || | || ||| | ||||||||||| || || || ||||| | Sbjct 1896453 CTGATTGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTTGCAGACCGTCTG 1896394 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | |||| || ||| ||| || |||||| | | |||||||| | |||||||| Sbjct 1896393 CTCATTGCCCTCGGTGGCGAAAAGCACTACAACGCGACAAACCCCTTCGACTTTATGGAC 1896334 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 | || || | || ||||||||||||||||| || ||||| || Sbjct 1896333 ATGATCTCTTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGT 1896290 >seq9 Length=1678725 Score = 89.7 bits (98), Expect = 1e-12 Identities = 177/255 (69%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 282507 TCGGTCATGATCATCACATGACCGTATCTCAGAGAAGAAGTGTCTTTGTACACTTTACCG 282566 || ||||| ||||||| || ||||| | || | || ||| | ||| |||| | Sbjct 1435753 TCCGTCATAATCATCAACTGGCCGTACCGCAAACTCGAGATGTTCGTATACTCTTTGTTG 1435812 Query 282567 GTTTGAAGGCCCAAAATTTGTTTGA-GCGCGGTGATTTCTTCGTTCTTTGTGATACTTGC 282625 | || ||||||| ||| | |||| | | | ||||||||||||||| |||| || | Sbjct 1435813 CTCTGGAGGCCCATAATCTTCTTGATGTTCTG-GATTTCTTCGTTCTTCATGAT-CTGGT 1435870 Query 282626 CACAGAT-GCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCATATCTCT 282684 || | || ||||| ||||| |||| |||||||| || || || || ||| | | | Sbjct 1435871 CATGCCTAGCTTCGCGCACGTTGAGCATTTTACCGCGAAGTGGGAAGACTCCAAAGTTAT 1435930 Query 282685 CGCGACCGACCACGGACAGTCCTGCAATTGCAAGTG--TTGCTGCGGAATCTCCCTCCGT 282742 |||| ||||| || || ||| |||| ||||| | ||| || |||||||| || || Sbjct 1435931 CGCGCCCGACGACACCCAATCCCGCAACAGCAAGGGCCTTG--GCAGAATCTCCTTCAGT 1435988 Query 282743 CAAGATGAGAGTACA 282757 | || |||||||| Sbjct 1435989 GAGAATAAGAGTACA 1436003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823810252820