Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3 161 1e-34 >seq3 Length=3024150 Score = 161 bits (178), Expect = 1e-34 Identities = 390/583 (67%), Gaps = 13/583 (2%) Strand=Plus/Minus Query 16943 TTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATA 17002 |||||||| | |||| ||||| || ||||| ||| | || ||||| | || || Sbjct 1898962 TTAAGATGACTGAACAAGAGACAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATC 1898903 Query 17003 AGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCG 17062 |||||||||||||| || || || ||||| ||||||||||| | ||| || || | Sbjct 1898902 AGTTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAA 1898843 Query 17063 GCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAA--TCGTTCGG 17120 || || || || || ||||| || || || || | || ||||| | || |||| || Sbjct 1898842 GCAAAAGATCCGGAGAAGAAGATCCCTTCTACCGCCGCGAACGCTACCAACCTCGT--GG 1898785 Query 17121 CGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGC 17180 | |||||| || || | ||||| | | ||||||||| || ||||| | || Sbjct 1898784 CAAACGTCGACCGTTGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGC 1898725 Query 17181 AATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACG 17240 | || || || || | || || | | | ||| ||| || || | Sbjct 1898724 ATGGTATAGTCTCGATCGAATTGAAGAGGAGGCCACGCTGCTGAGAGTCAGAGATGTAGG 1898665 Query 17241 TATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGT 17300 |||||||||| || ||| |||| ||||| ||||| ||||| || |||||||| | Sbjct 1898664 TATCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCAT 1898605 Query 17301 AAAAGCATCGGGCTTCCGCTATTTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCG 17359 |||| || ||| |||| || ||| ||||| | || | || || ||| | ||||| ||| Sbjct 1898604 AAAAACAGCGGACTTCAGCGGCTTGTACTTCGCTCG-AAAACCGCTCCACCAGATTCTCG 1898546 Query 17360 TTCACGATGCCGTCGCTCGCGGCGAAAAACGCCA--ATATATGCTTAATGAAATATTTTT 17417 || || || |||||| ||||| ||||| |||| | ||||| | ||||||| || Sbjct 1898545 TTGACAATACCGTCGGAAGCGGCAAAAAATGCCAGGACATATGAT--ATGAAATGGCGTT 1898488 Query 17418 CGTCCGGTGTAAG---AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGG 17474 ||| | || | || |||||| | ||||||||| ||||| | ||||||| Sbjct 1898487 CGTTGTCATTCAGGTTATCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGG 1898428 Query 17475 GGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 |||||||| |||| || || || ||||| | |||||| Sbjct 1898427 ACGTCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1898385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545509429520