Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3 116 4e-21 >seq3 Length=3024150 Score = 116 bits (128), Expect = 4e-21 Identities = 375/572 (66%), Gaps = 15/572 (3%) Strand=Plus/Minus Query 16193 AACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAA 16252 |||| ||||| || || || ||| | |||||||| | || || |||||||| ||| Sbjct 1898950 AACAAGAGACAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1898891 Query 16253 AAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCC 16312 || ||||| || ||||| ||||||||||| | |||||| || | |||||| || || Sbjct 1898890 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1898831 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAA--TCGTTCCGCGTACGTAGCAT 16370 || ||||| || || || || | || || || | || |||| || |||| | | Sbjct 1898830 GAGAAGAAGATCCCTTCTACCGCCGCGAACGCTACCAACCTCGT--GGCAAACGTCG-AC 1898774 Query 16371 CTTTATTACGA-ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTT 16429 | || | || ||||| | | |||| |||| || || || | || || || Sbjct 1898773 CGTTGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTC 1898714 Query 16430 TCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGT 16489 || || | || || | | | |||| || || || ||||| || || Sbjct 1898713 TCGATCGAATTGAAGAGGAGGCCACGCTGCTGAGAGTCAGAGATGTAGGTATCGATGAGG 1898654 Query 16490 AAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGA 16549 | | ||| |||| ||||| ||||| || || || ||||||||||| || || || Sbjct 1898653 AGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGG 1898594 Query 16550 GCCTCCGCTATTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACC 16608 | || || ||||||||| | || |||| || ||| |||| ||||| || || ||||| Sbjct 1898593 ACTTCAGCGGCTTGTACTTCGCTCG-AAAACCGCTCCACCAGATTCTCGTTGACAATACC 1898535 Query 16609 GTCACTTGCAGCAAAAAACGCCA--ATATGTGCTTAATGAAATATTTTTCGTCAGATGTA 16666 ||| || |||||||| |||| | || || | ||||||| ||||| | Sbjct 1898534 GTCGGAAGCGGCAAAAAATGCCAGGACATATGAT--ATGAAATGGCGTTCGTTGTCATTC 1898477 Query 16667 AGAATA---TGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAG 16723 || || | ||| || | ||||||||| ||||| | ||||| | ||||||||| Sbjct 1898476 AGGTTATCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAAC 1898417 Query 16724 CTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 |||| || || || ||||| | |||||| Sbjct 1898416 GAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1898385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414310502480