Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3 150 2e-31 >seq3 Length=3024150 Score = 150 bits (166), Expect = 2e-31 Identities = 375/567 (66%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| ||| |||||||| ||| || | |||||||| | ||| || | ||| ||||| Sbjct 1896610 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1896669 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || |||||||| ||||| ||||||||||| || | ||| || || || || || || || Sbjct 1896670 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1896729 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG--- 24302 || |||||||| || || || || || ||||| | | || || || | || | Sbjct 1896730 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1896789 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 | || ||||| | | ||||| || |||||| |||| ||||| || || ||||| Sbjct 1896790 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1896849 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 | ||||| || || || | || ||| || || | || ||||| || | ||| Sbjct 1896850 ACAGCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1896909 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 || | || || || ||||| || ||||| || |||||||| || | ||| Sbjct 1896910 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1896969 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 || | ||| || || | | || || || | | || || || || || || ||| Sbjct 1896970 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCATCA 1897029 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----G 24598 ||| ||||||||||| | ||||| | ||| | || | || |||| | Sbjct 1897030 GAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCAT-TGTCGTTAAGGCG 1897088 Query 24599 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 24658 |||||||| || | || |||||| || | |||| ||||| | ||||| || || || Sbjct 1897089 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACGC 1897148 Query 24659 CTCTGCCTTTTTATACATATTCCAGAT 24685 || || ||||| ||||| | |||||| Sbjct 1897149 TTCAGCTTTTTTGTACATTTGCCAGAT 1897175 Score = 141 bits (156), Expect = 1e-28 Identities = 358/538 (67%), Gaps = 10/538 (2%) Strand=Plus/Minus Query 24156 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 24215 || ||||| | |||||| | |||||| ||||| || | || ||||| || || || || Sbjct 1898920 CCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTC 1898861 Query 24216 TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 24275 || ||||| || || || ||||| ||||| || ||||| || |||||||| ||||| || Sbjct 1898860 TTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAGATCCCTTCTACCGCCGCGAAC 1898801 Query 24276 GCAATAAGTCTTTCTCCATAAC--CGGCGCT--GTCATGTATCCACTTTTGAGCCCAATC 24331 || | | || || ||| || | | |||| |||||| | | ||||| || Sbjct 1898800 GCTACCAACCTCGTGGCA-AACGTCGACCGTTGGTCAGAGATCCACCTGAGGGCCCACTC 1898742 Query 24332 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATT 24391 || ||||| || || || || || ||||| || | ||| ||||| | | | Sbjct 1898741 GGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATTGAAGAGGAGGCCACGCTGCTG 1898682 Query 24392 ACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 24451 | || | || ||||| || | ||| || ||||||| ||||||||||| || Sbjct 1898681 AGAGTCAGAGATGTAGGTATCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCAT 1898622 Query 24452 GGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCG 24511 ||||||||||| || ||||| | | || | |||||||| | |||| || Sbjct 1898621 CATGATTTGAAATCCATAAAAACAGCGGACTTCAGCGGCTTGTACTTCGCTCGAAAACCG 1898562 Query 24512 TTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTT 24571 || | | ||| || || || || ||||| || |||||||| |||| |||| | Sbjct 1898561 CTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCGGCAAAAAATGCCAGGACATATGA 1898502 Query 24572 TATAAAATATTTTTCGTCTGGTGTT-AGTTTA---TTCCAATCATTGATATCTTTAGATA 24627 ||| |||| ||||| || || || ||| ||||| || ||||||||| || | Sbjct 1898501 TATGAAATGGCGTTCGT-TGTCATTCAGGTTATCGTTCCAGTCGAAGATATCTTTGGACA 1898443 Query 24628 TATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 |||| | ||||| |||||||| || |||| || || || ||||| | ||| || Sbjct 1898442 TATCGATCTCTTCGGACGTCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1898385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721496098720