Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq3 253 2e-62
seq6 138 1e-27
seq1 116 4e-21
>seq3
Length=3024150
Score = 253 bits (280), Expect = 2e-62
Identities = 402/572 (70%), Gaps = 11/572 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| ||||||||||| || || ||||| |||||||| | ||| ||| ||||||||
Sbjct 1897175 ATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTG 1897116
Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751
|| || || | | | ||||||| | ||| | |||||||| ||||| || || ||
Sbjct 1897115 TCAAAAGATCTCCA-CGACTGGAATAACCGCCTTAACGACAATGAGCGTCACTTTGTCTC 1897057
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||| || || || ||||| |||||| || ||||||||||||||||| || || |||||
Sbjct 1897056 GCATGTCCTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCG 1896997
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| | | ||||| |||| ||| |||||||| ||||||||||| || || || ||
Sbjct 1896996 CTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGAT 1896937
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTC 116928
||| || | ||| || | || || || ||||| || ||| | | | ||
Sbjct 1896936 GGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAA 1896877
Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988
| | || || | || | || | ||||| || || || |||||| ||||||
Sbjct 1896876 GCAACGCGAGTACC---TTTTCGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGC 1896820
Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048
|| ||||| || ||||||||| ||| | || | || | ||||| | || ||
Sbjct 1896819 GGACTGGGCACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGATTAGTCGC 1896760
Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108
|||||| || || |||||| | ||||| || || ||||||| | || || ||| | ||
Sbjct 1896759 CTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAA 1896700
Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168
||| || ||||||||||| || || || ||| ||| || |||||| | ||||||||
Sbjct 1896699 GAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGG 1896640
Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200
||||| |||||| || || ||||||||||
Sbjct 1896639 AATGCATACCGACTTCGCATGCTTGCTGTTCA 1896608
Score = 215 bits (238), Expect = 5e-51
Identities = 394/573 (69%), Gaps = 13/573 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| || ||| |||| ||||| ||||| ||| ||| | || ||
Sbjct 1898385 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1898444
Query 116696 TCCAAGGACACGAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
||||| || | ||||||| || | |||| |||||||| |||||||||||
Sbjct 1898445 TCCAAAGATATCTTCGACTGGAACGATAACCTGAATGACAACGAACGCCATTTCATATCA 1898504
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG- 116811
| || ||||| ||||| ||||| |||||| || ||||||||||||||||| |||||
Sbjct 1898505 TATGTCCTGGCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCGG 1898564
Query 116812 -TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870
||||| | || || || | || || | || || || || || ||||| ||| |
Sbjct 1898565 TTTTCGAGC--GAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCATGA 1898622
Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCT---T 116927
|||| ||| | |||||||||| || || ||||||||| || ||| | |||| |
Sbjct 1898623 TGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACAT---CTCTGACT 1898679
Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987
| || || || | || || | |||||||| || || |||||||| |||||
Sbjct 1898680 CTCAGCAGCGTGGCCTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAGA 1898739
Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047
|||||||||| || | |||||| | | | | | | | || | | | | |||| |
Sbjct 1898740 CCGAGTGGGCCCTCAGGTGGATCTCTGACCAACGGTCGACGTTTGCCACGAGGTTGGTAG 1898799
Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107
| |||||||| || || || ||||||| || || ||| || | || || ||||| |
Sbjct 1898800 CGTTCGCGGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTGA 1898859
Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167
||||||| || |||||||| || | || || ||||| || || ||||||| |
Sbjct 1898860 AGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAAG 1898919
Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200
| ||||| || ||||||||| | ||||||
Sbjct 1898920 GGATGCATACAGATTTTGCCTGTCTCTTGTTCA 1898952
>seq6
Length=2129081
Score = 138 bits (152), Expect = 1e-27
Identities = 158/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||||||||| || || || |||| ||||| | |
Sbjct 300002 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 300061
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | |||| || |||| || || |||||||| ||| |||||||
Sbjct 300062 GACACGATCGATAACG-TGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCA 300120
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||||||||| ||||| || |||| ||||| || |||||| ||
Sbjct 300121 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACTATAA 300180
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||| ||||||||| |||| ||||||| ||
Sbjct 300181 CATTCAGAAGGAGTCCACCTTGCATCTCGT 300210
Score = 132 bits (146), Expect = 5e-26
Identities = 155/207 (75%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| || || || |||||| |||| || || | |
Sbjct 299435 ATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTTCG 299494
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | |||| || |||| ||||| ||||| |||||| | |||||
Sbjct 299495 GACACCATCGATAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGAATCCCCCCCGACCA 299553
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||||||||| ||||| || |||| |||||||| ||||| ||
Sbjct 299554 GCAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATAA 299613
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895
||||||||||||| | || || |||||
Sbjct 299614 CATCCAGAAGGAGTCGACCCTTCATCT 299640
Score = 114 bits (126), Expect = 1e-20
Identities = 150/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || ||| | || || || || ||||| |||| || || | |
Sbjct 299720 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATCT 299779
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| |||||| || || | ||||| |||||||||||| | |||||
Sbjct 299780 GACACGATCGATAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 299838
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||||||||| ||||| || |||| |||||||| ||||| ||
Sbjct 299839 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTATAA 299898
Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893
||| ||||||||| | || || |||
Sbjct 299899 CATTCAGAAGGAGTCGACCCTCCAT 299923
Score = 114 bits (126), Expect = 1e-20
Identities = 151/207 (73%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| || ||||| |||| ||||| | |
Sbjct 300230 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAGTCGTCT 300289
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | |||| ||| |||| ||||| ||||| ||||| | |||||
Sbjct 300290 GACACGATCGACAACG-TGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCA 300348
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||| | ||| ||||| || || || || | ||||| || ||||||||
Sbjct 300349 GCAGCGCCTCATTTTCGCTGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAA 300408
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895
|||||||||||| | || || |||||
Sbjct 300409 TATCCAGAAGGAGTCGACTCTTCATCT 300435
Score = 113 bits (124), Expect = 5e-20
Identities = 149/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || || || || || |||||||| || || ||||| | || ||||| | |
Sbjct 300505 AATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACAATCACGCTGGAGGTCGAGTCTTC 300564
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||||| || |||| ||||| || || || || | |||||
Sbjct 300565 GGACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 300624
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||| | ||||||||| ||||| || |||| |||||||| ||||||||
Sbjct 300625 GCAGCGCCTCATTTTCGCGGGCAAGCAGCTCGAGGACGGTCGCACCCTGTCTGACTACAA 300684
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895
|||||||||||| ||| || || ||
Sbjct 300685 TATCCAGAAGGAGAGCACCCTTCACCT 300711
>seq1
Length=3320137
Score = 116 bits (128), Expect = 4e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || ||||| || || ||||| ||||||||| | || ||||| | ||
Sbjct 2298682 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2298741
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | |||| | || || | || || ||||||||||| |||| ||
Sbjct 2298742 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2298801
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || || | |||||||| ||||| || || | || ||||| ||||||||||
Sbjct 2298802 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2298861
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| | ||||| || || ||
Sbjct 2298862 ATCCAGAAGGAGTCGACGCTTCACCTTGT 2298890
Score = 111 bits (122), Expect = 2e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | |||||||| |||||||| | || || || | |
Sbjct 2298115 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2298174
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | |||||| || |||| ||||| ||||| ||||| | ||||||
Sbjct 2298175 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 2298234
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||| || |||||||| || || | |||||| || ||| |||||
Sbjct 2298235 CAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCCGATTACAAT 2298294
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCT 40895
|||||||||||| | || || || ||
Sbjct 2298295 ATCCAGAAGGAGTCTACCCTTCACCT 2298320
Score = 102 bits (112), Expect = 8e-17
Identities = 146/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| || ||||| | || || || | |
Sbjct 2298910 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACAATCACGTTGGAGGTAGAGTCTTCG 2298969
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||| || |||| ||||| || |||||||| ||||||||
Sbjct 2298970 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAG 2299029
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || || | |||||||| || |||| |||| ||||| || || ||||||
Sbjct 2299030 CAACGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACAAC 2299089
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCT 40895
|| ||||| ||| ||| || |||||
Sbjct 2299090 ATTCAGAAAGAGAGCACCCTCCATCT 2299115
Score = 91.5 bits (100), Expect = 2e-13
Identities = 146/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || |||||||| || | ||||| || || ||||| |||| ||||| | |
Sbjct 2298397 ATGCAGATTTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2298456
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | |||| || |||| ||||| || || || || | |||||
Sbjct 2298457 GACACTATTGACAACG-TGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 2298515
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| | |||| ||| || || ||| |||| || | ||| || ||| ||| |||||
Sbjct 2298516 GCAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAA 2298575
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895
|| ||||| ||| | || |||| ||
Sbjct 2298576 TATTCAGAAAGAGTCTACTTTGCACCT 2298602
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 40795 ATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854
|||||| | || ||||| || ||||||| ||| ||||| ||||| || || | || ||
Sbjct 675730 ATCCCCCCTGATCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGGACA 675671
Query 40855 CTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| | |||||||||||||||||||||| | || || || || ||
Sbjct 675670 CTGAGCGACTACAACATCCAGAAGGAGTCGACTCTTCACCTGGT 675627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219109836640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |