Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 253 2e-62 seq6 138 1e-27 seq1 116 4e-21 >seq3 Length=3024150 Score = 253 bits (280), Expect = 2e-62 Identities = 402/572 (70%), Gaps = 11/572 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||||||||| || || ||||| |||||||| | ||| ||| |||||||| Sbjct 1897175 ATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTG 1897116 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 || || || | | | ||||||| | ||| | |||||||| ||||| || || || Sbjct 1897115 TCAAAAGATCTCCA-CGACTGGAATAACCGCCTTAACGACAATGAGCGTCACTTTGTCTC 1897057 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| || || || ||||| |||||| || ||||||||||||||||| || || ||||| Sbjct 1897056 GCATGTCCTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCG 1896997 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | | ||||| |||| ||| |||||||| ||||||||||| || || || || Sbjct 1896996 CTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGAT 1896937 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTC 116928 ||| || | ||| || | || || || ||||| || ||| | | | || Sbjct 1896936 GGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAA 1896877 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | | || || | || | || | ||||| || || || |||||| |||||| Sbjct 1896876 GCAACGCGAGTACC---TTTTCGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGC 1896820 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 || ||||| || ||||||||| ||| | || | || | ||||| | || || Sbjct 1896819 GGACTGGGCACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGATTAGTCGC 1896760 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 |||||| || || |||||| | ||||| || || ||||||| | || || ||| | || Sbjct 1896759 CTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAA 1896700 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| || ||||||||||| || || || ||| ||| || |||||| | |||||||| Sbjct 1896699 GAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGG 1896640 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 ||||| |||||| || || |||||||||| Sbjct 1896639 AATGCATACCGACTTCGCATGCTTGCTGTTCA 1896608 Score = 215 bits (238), Expect = 5e-51 Identities = 394/573 (69%), Gaps = 13/573 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || ||| |||| ||||| ||||| ||| ||| | || || Sbjct 1898385 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1898444 Query 116696 TCCAAGGACACGAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||| || | ||||||| || | |||| |||||||| ||||||||||| Sbjct 1898445 TCCAAAGATATCTTCGACTGGAACGATAACCTGAATGACAACGAACGCCATTTCATATCA 1898504 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG- 116811 | || ||||| ||||| ||||| |||||| || ||||||||||||||||| ||||| Sbjct 1898505 TATGTCCTGGCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCGG 1898564 Query 116812 -TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 ||||| | || || || | || || | || || || || || ||||| ||| | Sbjct 1898565 TTTTCGAGC--GAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCATGA 1898622 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCT---T 116927 |||| ||| | |||||||||| || || ||||||||| || ||| | |||| | Sbjct 1898623 TGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACAT---CTCTGACT 1898679 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | || || || | || || | |||||||| || || |||||||| ||||| Sbjct 1898680 CTCAGCAGCGTGGCCTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAGA 1898739 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 |||||||||| || | |||||| | | | | | | | || | | | | |||| | Sbjct 1898740 CCGAGTGGGCCCTCAGGTGGATCTCTGACCAACGGTCGACGTTTGCCACGAGGTTGGTAG 1898799 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 | |||||||| || || || ||||||| || || ||| || | || || ||||| | Sbjct 1898800 CGTTCGCGGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTGA 1898859 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 ||||||| || |||||||| || | || || ||||| || || ||||||| | Sbjct 1898860 AGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAAG 1898919 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 | ||||| || ||||||||| | |||||| Sbjct 1898920 GGATGCATACAGATTTTGCCTGTCTCTTGTTCA 1898952 >seq6 Length=2129081 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||||||||| || || || |||| ||||| | | Sbjct 300002 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 300061 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| || || |||||||| ||| ||||||| Sbjct 300062 GACACGATCGATAACG-TGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCA 300120 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||||||||| ||||| || |||| ||||| || |||||| || Sbjct 300121 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACTATAA 300180 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| |||| ||||||| || Sbjct 300181 CATTCAGAAGGAGTCCACCTTGCATCTCGT 300210 Score = 132 bits (146), Expect = 5e-26 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || || |||||| |||| || || | | Sbjct 299435 ATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTTCG 299494 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || |||| ||||| ||||| |||||| | ||||| Sbjct 299495 GACACCATCGATAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGAATCCCCCCCGACCA 299553 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||||||||| ||||| || |||| |||||||| ||||| || Sbjct 299554 GCAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATAA 299613 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 ||||||||||||| | || || ||||| Sbjct 299614 CATCCAGAAGGAGTCGACCCTTCATCT 299640 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || || || || ||||| |||| || || | | Sbjct 299720 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATCT 299779 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 299780 GACACGATCGATAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 299838 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||||||||| ||||| || |||| |||||||| ||||| || Sbjct 299839 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTATAA 299898 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||| ||||||||| | || || ||| Sbjct 299899 CATTCAGAAGGAGTCGACCCTCCAT 299923 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || ||||| |||| ||||| | | Sbjct 300230 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAGTCGTCT 300289 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| ||| |||| ||||| ||||| ||||| | ||||| Sbjct 300290 GACACGATCGACAACG-TGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCA 300348 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | ||| ||||| || || || || | ||||| || |||||||| Sbjct 300349 GCAGCGCCTCATTTTCGCTGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAA 300408 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||||||| | || || ||||| Sbjct 300409 TATCCAGAAGGAGTCGACTCTTCATCT 300435 Score = 113 bits (124), Expect = 5e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || |||||||| || || ||||| | || ||||| | | Sbjct 300505 AATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACAATCACGCTGGAGGTCGAGTCTTC 300564 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||||| || |||| ||||| || || || || | ||||| Sbjct 300565 GGACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 300624 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | ||||||||| ||||| || |||| |||||||| |||||||| Sbjct 300625 GCAGCGCCTCATTTTCGCGGGCAAGCAGCTCGAGGACGGTCGCACCCTGTCTGACTACAA 300684 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||||||| ||| || || || Sbjct 300685 TATCCAGAAGGAGAGCACCCTTCACCT 300711 >seq1 Length=3320137 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| | || ||||| | || Sbjct 2298682 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2298741 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | || || | || || ||||||||||| |||| || Sbjct 2298742 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2298801 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | |||||||| ||||| || || | || ||||| |||||||||| Sbjct 2298802 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2298861 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | ||||| || || || Sbjct 2298862 ATCCAGAAGGAGTCGACGCTTCACCTTGT 2298890 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| |||||||| | || || || | | Sbjct 2298115 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2298174 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || |||| ||||| ||||| ||||| | |||||| Sbjct 2298175 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 2298234 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| || |||||||| || || | |||||| || ||| ||||| Sbjct 2298235 CAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCCGATTACAAT 2298294 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||||||| | || || || || Sbjct 2298295 ATCCAGAAGGAGTCTACCCTTCACCT 2298320 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || ||||| | || || || | | Sbjct 2298910 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACAATCACGTTGGAGGTAGAGTCTTCG 2298969 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || |||| ||||| || |||||||| |||||||| Sbjct 2298970 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAG 2299029 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || || | |||||||| || |||| |||| ||||| || || |||||| Sbjct 2299030 CAACGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACAAC 2299089 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCT 40895 || ||||| ||| ||| || ||||| Sbjct 2299090 ATTCAGAAAGAGAGCACCCTCCATCT 2299115 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || | ||||| || || ||||| |||| ||||| | | Sbjct 2298397 ATGCAGATTTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2298456 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| ||||| || || || || | ||||| Sbjct 2298457 GACACTATTGACAACG-TGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 2298515 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| ||| || || ||| |||| || | ||| || ||| ||| ||||| Sbjct 2298516 GCAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAA 2298575 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 || ||||| ||| | || |||| || Sbjct 2298576 TATTCAGAAAGAGTCTACTTTGCACCT 2298602 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 40795 ATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854 |||||| | || ||||| || ||||||| ||| ||||| ||||| || || | || || Sbjct 675730 ATCCCCCCTGATCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGGACA 675671 Query 40855 CTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || | |||||||||||||||||||||| | || || || || || Sbjct 675670 CTGAGCGACTACAACATCCAGAAGGAGTCGACTCTTCACCTGGT 675627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219109836640