Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 136 3e-27 seq6 114 1e-20 >seq1 Length=3320137 Score = 136 bits (150), Expect = 3e-27 Identities = 158/212 (75%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 118529 CACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCT 118587 ||||||| || | ||||||||||| ||||| ||||||||| | ||| ||| ||||| Sbjct 2298607 CACCAAGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCT 2298548 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | | ||| ||||||||| |||| | || ||||| |||||||| || || |||||||| Sbjct 2298547 CCAACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 2298488 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| || || || | || | ||||||| ||||||||||| || | ||| | Sbjct 2298487 GAATCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCT 2298428 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || |||| ||| ||||| |||||||||||| Sbjct 2298427 TCCCCGTCAAAGTCTTTACGAAAATCTGCATG 2298396 Score = 125 bits (138), Expect = 6e-24 Identities = 155/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 118530 ACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | |||||||| || || || ||||||||| | |||||| |||||| Sbjct 2298324 ACCAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTC 2298265 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| |||||| |||| ||||||||||| |||||||| || ||||||||||| Sbjct 2298264 AAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTG 2298205 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||||||| ||| || || | || | || || Sbjct 2298204 AATCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTT 2298145 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| |||| || || || || ||||||||| Sbjct 2298144 GCCCGTCAATGTCTTGACGAAGATCTGCATG 2298114 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| | || || |||||||||||| || || Sbjct 2298878 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCC 2298819 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || || ||||| ||||| || || ||||||||||| || || || ||| Sbjct 2298818 GCAAAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTG 2298759 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | ||||||||| | ||| | || ||||| ||||| ||| Sbjct 2298758 ACATTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTT 2298699 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 2298698 TTCACAAAGATCTGCAT 2298682 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||||||| || || |||||| Sbjct 675627 ACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGTGTCCGGCCATCCTCA 675686 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTAT 118633 ||||| || |||||| ||||||| ||||||||||| || || || Sbjct 675687 AGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCAGGGGGGAT 675730 >seq6 Length=2129081 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || || ||||| || | |||||| ||||||||| || || ||| Sbjct 300426 GTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCA 300367 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | ||||| |||||||| || || || || ||||||||||| ||| ||| || Sbjct 300366 GCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTTC 300307 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | ||||||||||| || | ||| ||||| ||||| || Sbjct 300306 ACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTC 300247 Query 118722 TTTACAAAAATCTGCATGGCT 118742 || || || ||||||||| || Sbjct 300246 TTGACGAAGATCTGCATGCCT 300226 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||| || || | ||||| ||||||||||| || || Sbjct 299631 GTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCC 299572 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | ||||||||| ||||| || || ||||||||||| ||| || || Sbjct 299571 GCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATCTTCGCCTTC 299512 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||||| ||| ||||||| ||| | ||| || || || || || Sbjct 299511 ACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCAGTGAGGGTC 299452 Query 118722 TTTACAAAAATCTGCATGGCT 118742 || || || ||||||||| || Sbjct 299451 TTCACGAAGATCTGCATGTCT 299431 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || |||||||| || ||| | |||||| || |||||||| || || Sbjct 300198 GTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCC 300139 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||||| || || || ||||||||||| ||| ||| || || Sbjct 300138 GCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTC 300079 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | ||||||||||| || | ||| ||||| || || || Sbjct 300078 ACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTC 300019 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||| ||||| Sbjct 300018 TTGACGAAAATTTGCAT 300002 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118531 CCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || |||||||| || || | ||||| ||||||| Sbjct 299927 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 299868 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || || ||| |||| | |||||||| || || || |||||||||||||| | Sbjct 299867 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 299808 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | |||| ||||| | ||| ||||||| || | ||| || | Sbjct 299807 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 299748 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | |||| || || || || ||||||||| || Sbjct 299747 CAGTCAACGTCTTCACGAAGATCTGCATGCCT 299716 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || || ||||| || || ||||| ||||||||||| || || ||| | Sbjct 300697 CTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAA 300638 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||||| |||||||| |||||||| || || |||||||| ||| || || || | Sbjct 300637 AATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTGACATT 300578 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| ||||||| ||||||||| | || | || || || || || || || || Sbjct 300577 GTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTACCCGTGAGGGTCTTGAC 300518 Query 118727 AAAAATCTGCAT 118738 ||| |||||||| Sbjct 300517 AAAGATCTGCAT 300506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830325977688