Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq6 118 8e-22
seq1 104 2e-17
>seq6
Length=2129081
Score = 118 bits (130), Expect = 8e-22
Identities = 153/210 (73%), Gaps = 1/210 (0%)
Strand=Plus/Minus
Query 45128 ACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186
|||||| || || |||||||||||||| || |||||||| ||| |||| |||| ||
Sbjct 300715 ACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTC 300656
Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246
|| || || || ||||| || | ||||| ||||||||||| | || |||||||||
Sbjct 300655 GAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTG 300596
Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306
||| || ||| || | | ||||| | ||| ||||||| || || |||||
Sbjct 300595 AATCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTT 300536
Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||||| || ||||| |||||||| |||||
Sbjct 300535 ACCCGTGAGGGTCTTGACAAAGATCTGCAT 300506
Score = 116 bits (128), Expect = 3e-21
Identities = 142/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| ||||| ||||| || ||| |||| || || || || || |||||
Sbjct 299626 CTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 299567
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
||||| ||||| |||||||| || | |||||||||||| ||| || ||| ||
Sbjct 299566 GATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATCTTCGCCTTCACGTT 299507
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | ||||| | ||||||||| | ||| |||||||| || || || ||||||||
Sbjct 299506 ATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCAGTGAGGGTCTTCAC 299447
Query 45325 AAAGATTTGCATGT 45338
||||| |||||||
Sbjct 299446 GAAGATCTGCATGT 299433
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193
|||| ||| ||||||||||||||| |||||| || ||| |||| || || ||
Sbjct 300204 TGCAAGGTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCTTCGAGCTGC 300145
Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253
|| || ||||| ||||| ||||| ||||| || || | |||||||| || ||| ||
Sbjct 300144 TTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTC 300085
Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313
||| || | | |||| | ||| ||||| | |||||||||||||||||
Sbjct 300084 GCCTTCACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTG 300025
Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| || || ||||||||
Sbjct 300024 AGGGTCTTGACGAAAATTTGCAT 300002
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| || |||||||| || ||| | || || ||||| || || |||||
Sbjct 300421 CTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCAGCGAA 300362
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
|| | ||||| ||||| || || | ||||||||||||| ||| ||| ||| ||
Sbjct 300361 AATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTT 300302
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | |||| ||| ||||| | || ||||||||||| ||||| ||||| ||
Sbjct 300301 GTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTGAC 300242
Query 45325 AAAGATTTGCATG 45337
||||| ||||||
Sbjct 300241 GAAGATCTGCATG 300229
>seq1
Length=3320137
Score = 104 bits (114), Expect = 2e-17
Identities = 151/212 (71%), Gaps = 1/212 (0%)
Strand=Plus/Minus
Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185
||||||| || || || ||||||||| || ||||| ||| || ||| | || |
Sbjct 2298325 TACCAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCT 2298266
Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245
| || ||||| || ||||| || | ||||| ||||||||||| | |||||||||||||
Sbjct 2298265 CAAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCT 2298206
Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305
||| || ||| || | | ||||| | |||||| || | || || ||||
Sbjct 2298205 GAATCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCT 2298146
Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
||||||||| ||||| || ||||| ||||||
Sbjct 2298145 TGCCCGTCAATGTCTTGACGAAGATCTGCATG 2298114
Score = 98.7 bits (108), Expect = 8e-16
Identities = 149/211 (71%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 45128 ACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186
|||||| |||| || ||| |||||||| ||||| ||| || || | || ||
Sbjct 2298606 ACCAAGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTC 2298547
Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246
|| || ||||| ||||| |||||||| || ||||||||||| | || |||||||||
Sbjct 2298546 CAACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTG 2298487
Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306
||| || ||| || | | ||||| | ||| ||||| | || ||||||||
Sbjct 2298486 AATCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTT 2298427
Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
||||||| |||||| || || || ||||||
Sbjct 2298426 CCCCGTCAAAGTCTTTACGAAAATCTGCATG 2298396
Score = 98.7 bits (108), Expect = 8e-16
Identities = 149/211 (71%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185
|||| || || || |||||||| |||||||||||||| || ||| |||| |||| |
Sbjct 2299120 TACCCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCT 2299061
Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245
||| ||| || || || || |||| || || ||||| || || | || ||||||||
Sbjct 2299060 CCAATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTT 2299001
Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305
||| || ||| || | | ||||| | ||| ||||||| || || ||||
Sbjct 2299000 GAATCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCT 2298941
Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| || || ||||| || ||||| |||||
Sbjct 2298940 TGCCTGTGAGGGTCTTGACGAAGATCTGCAT 2298910
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395075132590294
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |