Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq6 118 8e-22 seq1 104 2e-17 >seq6 Length=2129081 Score = 118 bits (130), Expect = 8e-22 Identities = 153/210 (73%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 45128 ACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| || || |||||||||||||| || |||||||| ||| |||| |||| || Sbjct 300715 ACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTC 300656 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || || || ||||| || | ||||| ||||||||||| | || ||||||||| Sbjct 300655 GAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTG 300596 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || ||| || | | ||||| | ||| ||||||| || || ||||| Sbjct 300595 AATCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTT 300536 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || ||||| |||||||| ||||| Sbjct 300535 ACCCGTGAGGGTCTTGACAAAGATCTGCAT 300506 Score = 116 bits (128), Expect = 3e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||| ||||| || ||| |||| || || || || || ||||| Sbjct 299626 CTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 299567 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| ||||| |||||||| || | |||||||||||| ||| || ||| || Sbjct 299566 GATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATCTTCGCCTTCACGTT 299507 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||||| | ||||||||| | ||| |||||||| || || || |||||||| Sbjct 299506 ATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCAGTGAGGGTCTTCAC 299447 Query 45325 AAAGATTTGCATGT 45338 ||||| ||||||| Sbjct 299446 GAAGATCTGCATGT 299433 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 |||| ||| ||||||||||||||| |||||| || ||| |||| || || || Sbjct 300204 TGCAAGGTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCTTCGAGCTGC 300145 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || ||||| ||||| ||||| ||||| || || | |||||||| || ||| || Sbjct 300144 TTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTC 300085 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | |||| | ||| ||||| | ||||||||||||||||| Sbjct 300084 GCCTTCACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTG 300025 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || || |||||||| Sbjct 300024 AGGGTCTTGACGAAAATTTGCAT 300002 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| || |||||||| || ||| | || || ||||| || || ||||| Sbjct 300421 CTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCAGCGAA 300362 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| ||||| || || | ||||||||||||| ||| ||| ||| || Sbjct 300361 AATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTT 300302 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| ||| ||||| | || ||||||||||| ||||| ||||| || Sbjct 300301 GTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTGAC 300242 Query 45325 AAAGATTTGCATG 45337 ||||| |||||| Sbjct 300241 GAAGATCTGCATG 300229 >seq1 Length=3320137 Score = 104 bits (114), Expect = 2e-17 Identities = 151/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 ||||||| || || || ||||||||| || ||||| ||| || ||| | || | Sbjct 2298325 TACCAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCT 2298266 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 | || ||||| || ||||| || | ||||| ||||||||||| | ||||||||||||| Sbjct 2298265 CAAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCT 2298206 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 ||| || ||| || | | ||||| | |||||| || | || || |||| Sbjct 2298205 GAATCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCT 2298146 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||||| ||||| || ||||| |||||| Sbjct 2298145 TGCCCGTCAATGTCTTGACGAAGATCTGCATG 2298114 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 45128 ACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| |||| || ||| |||||||| ||||| ||| || || | || || Sbjct 2298606 ACCAAGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTC 2298547 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || ||||| ||||| |||||||| || ||||||||||| | || ||||||||| Sbjct 2298546 CAACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTG 2298487 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || ||| || | | ||||| | ||| ||||| | || |||||||| Sbjct 2298486 AATCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTT 2298427 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||| |||||| || || || |||||| Sbjct 2298426 CCCCGTCAAAGTCTTTACGAAAATCTGCATG 2298396 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 |||| || || || |||||||| |||||||||||||| || ||| |||| |||| | Sbjct 2299120 TACCCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCT 2299061 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 ||| ||| || || || || |||| || || ||||| || || | || |||||||| Sbjct 2299060 CCAATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTT 2299001 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 ||| || ||| || | | ||||| | ||| ||||||| || || |||| Sbjct 2299000 GAATCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCT 2298941 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || ||||| ||||| Sbjct 2298940 TGCCTGTGAGGGTCTTGACGAAGATCTGCAT 2298910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075132590294