Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq3 165 7e-36
seq6 109 5e-19
seq1 107 2e-18
>seq3
Length=3024150
Score = 165 bits (182), Expect = 7e-36
Identities = 380/565 (67%), Gaps = 13/565 (2%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|||||| | |||||||| || || | || ||||||||||| |||||| | || ||
Sbjct 1898385 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1898444
Query 57630 TCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| || ||| | ||| ||| ||| ||| || || || | |||| || |
Sbjct 1898445 TCCAAAGATATCTTCGACTGGAACGATAACCTGAATGACAACGAACGCCATTTCATATCA 1898504
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
| || |||| ||||| ||||| ||||| |||||||| ||||||||| |||| || |
Sbjct 1898505 TATGTCCTGGCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCGG 1898564
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
||||| ||||| |||| | || | | || ||||| ||||||||| | ||
Sbjct 1898565 TTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCATGATG 1898624
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866
|||||| | || || |||| || || || ||||||||||| ||| | | ||
Sbjct 1898625 GAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATCTCTG---ACTCT 1898681
Query 57867 GAGAAACGTAG---ACTGTTCAACGCGATCGAAACAATGCC-CGCGATCGCCAAGAAGGC 57922
|| | ||| | || ||||| ||||||| || || || ||| || ||||| |
Sbjct 1898682 CAGCAGCGTGGCCTCCTCTTCAATTCGATCGAGACTATACCATGCG-TCAAGCAGAAGAC 1898740
Query 57923 AGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG-CCACGTTCGCCGAGAGGCTAATCG 57981
|||||| | ||| ||||| | | |||| | ||||| ||| |||| | | |
Sbjct 1898741 CGAGTGGGCCCTCAGGTGGAT-CTCTGACCAACGGTCGACGTTTGCCACGAGGTTGGTAG 1898799
Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041
||||||| || || ||||| || ||||| || || ||||| |||| || ||| |||
Sbjct 1898800 CGTTCGCGGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTGA 1898859
Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101
||||||| || || ||||| || | || ||| ||||| |||| || ||||| |
Sbjct 1898860 AGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAAG 1898919
Query 58102 GTCTCCATACTGATTTTGCGTGCCT 58126
| | ||||| |||||||| || ||
Sbjct 1898920 GGATGCATACAGATTTTGCCTGTCT 1898944
Score = 134 bits (148), Expect = 1e-26
Identities = 371/563 (66%), Gaps = 13/563 (2%)
Strand=Plus/Minus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | ||||||||||| || ||||| || || ||||| | |||||| | ||||||
Sbjct 1897175 ATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTG 1897116
Query 57630 TCTAAGGATCTGAGCGATTGGGAT---TCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| || ||||| ||| ||| || ||| || || |||| | | ||| |
Sbjct 1897115 TCAAAAGATCTCCACGACTGGAATAACCGCCTTAACGACAATGAGCGTCACTTTGTCTCG 1897056
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
|| || | |||||||| ||||| || ||||| || || |||||||| | || || |
Sbjct 1897055 CATGTCCTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCGC 1896996
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| || | || || || | | | |||||| | ||||| ||||| || ||| | ||
Sbjct 1896995 TTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGATG 1896936
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGAC----AA 57862
||||| | || || | || || || || |||||||| ||| | |||||| |
Sbjct 1896935 GAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAAG 1896876
Query 57863 CGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGC 57922
| ||| || ||| || ||| | || | || || || ||| || | ||||||
Sbjct 1896875 CAACGCGA---GTA-CCTTTTCGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGC 1896820
Query 57923 AGAGTGGTCAATCAAATGGAT-AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCG 57981
|| ||| || | ||||| | || | | |||| || || ||| | || |||
Sbjct 1896819 GGACTGGGCACTACGCTGGATCTCCGATCGTCGC-TCCACATTTGCTGAGCGATTAGTCG 1896761
Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041
| |||||||| || || || || ||||| || || || || |||| || ||| |||
Sbjct 1896760 CCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGA 1896701
Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101
|||| || ||||| ||||| || || || || ||| || | || || |||||||
Sbjct 1896700 AGAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGG 1896641
Query 58102 GTCTCCATACTGATTTTGCGTGC 58124
| | ||||| || || || |||
Sbjct 1896640 GAATGCATACCGACTTCGCATGC 1896618
>seq6
Length=2129081
Score = 109 bits (120), Expect = 5e-19
Identities = 157/215 (73%), Gaps = 5/215 (2%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| ||||| ||||| |||||||| |||| || || ||||
Sbjct 300229 CATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAGTCGTC 300288
Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310
|||| |||| | || || || ||| | ||||||||| || | ||||| ||||
Sbjct 300289 TGACACGATCGACAACGTGAAGGCAAAGATTCA-GGACAAGGAGGGTATCCCGCCTGACC 300347
Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTAT 31369
||||||| || || ||||||||||| || | || || | | | ||| | || ||
Sbjct 300348 AGCAGCGCCTCATTTTCGCTGGCAAGCAACTCGAGGA-TGGACGCACTCTTTCGGACTAC 300406
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCT-GGTAC 31403
|| || || || || |||||||||||||| |||||
Sbjct 300407 AATATCCAGAAGGAGTCGACTCTTCATCTCGGTAC 300441
Score = 100 bits (110), Expect = 3e-16
Identities = 147/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 31191 ACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGT 31250
||||||| || ||||| ||||| || || || || ||||||||| |||| || || | |
Sbjct 299433 ACATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTT 299492
Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310
| |||| |||| | || || || || ||||||||| || | || |||||||
Sbjct 299493 CGGACACCATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAGGGAATCCCCCCCGACC 299552
Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370
|||||||| | || ||||| ||||| ||| | || ||| || | || ||||
Sbjct 299553 AGCAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATA 299612
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCT 31398
|||| || || || ||||| ||||||||
Sbjct 299613 ACATCCAGAAGGAGTCGACCCTTCATCT 299640
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| || || ||||| ||||| || |||| || || | ||
Sbjct 300002 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 300061
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || || || || ||||| ||| | || || ||||||
Sbjct 300062 GACACGATCGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAG 300121
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| | || ||||| ||||| ||| | |||||| ||| | ||| ||||||
Sbjct 300122 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACTATAAC 300181
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
||||| || || || || | ||||| || |||
Sbjct 300182 ATTCAGAAGGAGTCCACCTTGCATCTCGTCCTT 300214
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| |||| || || |||||||| |||| || || | ||
Sbjct 299719 CATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATC 299778
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| | || ||||||||| ||| | || || |||||
Sbjct 299779 TGACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 299838
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| | || ||||| ||||| ||| | || ||| || | || |||||
Sbjct 299839 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTATAA 299898
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGG 31400
|||||| || || ||||| || ||| |||
Sbjct 299899 CATTCAGAAGGAGTCGACCCTCCATTTGG 299927
>seq1
Length=3320137
Score = 107 bits (118), Expect = 2e-18
Identities = 148/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| ||||||||||||||| |||| || || |||||||| |||| || || | ||
Sbjct 2298396 CATGCAGATTTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTC 2298455
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | | || | || || || || |||||||||||| | || ||||||||
Sbjct 2298456 GGACACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 2298515
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| || | || |||||||| || |||||||| || ||| | |||||| ||
Sbjct 2298516 GCAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAA 2298575
Query 31372 CATTCAAAAAGAATCGACTCTTCATCT 31398
||||| ||||| || ||| | || ||
Sbjct 2298576 TATTCAGAAAGAGTCTACTTTGCACCT 2298602
Score = 96.9 bits (106), Expect = 3e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| |||| ||||| || ||||| | || || || | ||
Sbjct 2298114 CATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTC 2298173
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | |||| | ||||| || || ||||||||| || | || ||||||||
Sbjct 2298174 GGACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCA 2298233
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||||||||| || |||||||| |||||| | || ||
Sbjct 2298234 GCAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGA 2298269
Score = 91.5 bits (100), Expect = 1e-13
Identities = 145/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || |||||||| || ||||| | || || || | ||
Sbjct 2298910 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACAATCACGTTGGAGGTAGAGTCTTCG 2298969
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || || || |||||||||||| | ||||| ||||||
Sbjct 2298970 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAG 2299029
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| || || || || || ||||| || ||||| ||| | || | ||||| |||
Sbjct 2299030 CAACGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACAAC 2299089
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGG 31400
||||| ||||| || || |||||||
Sbjct 2299090 ATTCAGAAAGAGAGCACCCTCCATCTGG 2299117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766321990880
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