Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 165 7e-36 seq6 109 5e-19 seq1 107 2e-18 >seq3 Length=3024150 Score = 165 bits (182), Expect = 7e-36 Identities = 380/565 (67%), Gaps = 13/565 (2%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| || || | || ||||||||||| |||||| | || || Sbjct 1898385 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1898444 Query 57630 TCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || ||| | ||| ||| ||| ||| || || || | |||| || | Sbjct 1898445 TCCAAAGATATCTTCGACTGGAACGATAACCTGAATGACAACGAACGCCATTTCATATCA 1898504 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 | || |||| ||||| ||||| ||||| |||||||| ||||||||| |||| || | Sbjct 1898505 TATGTCCTGGCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCGG 1898564 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||||| ||||| |||| | || | | || ||||| ||||||||| | || Sbjct 1898565 TTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCATGATG 1898624 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 |||||| | || || |||| || || || ||||||||||| ||| | | || Sbjct 1898625 GAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATCTCTG---ACTCT 1898681 Query 57867 GAGAAACGTAG---ACTGTTCAACGCGATCGAAACAATGCC-CGCGATCGCCAAGAAGGC 57922 || | ||| | || ||||| ||||||| || || || ||| || ||||| | Sbjct 1898682 CAGCAGCGTGGCCTCCTCTTCAATTCGATCGAGACTATACCATGCG-TCAAGCAGAAGAC 1898740 Query 57923 AGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG-CCACGTTCGCCGAGAGGCTAATCG 57981 |||||| | ||| ||||| | | |||| | ||||| ||| |||| | | | Sbjct 1898741 CGAGTGGGCCCTCAGGTGGAT-CTCTGACCAACGGTCGACGTTTGCCACGAGGTTGGTAG 1898799 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041 ||||||| || || ||||| || ||||| || || ||||| |||| || ||| ||| Sbjct 1898800 CGTTCGCGGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTGA 1898859 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 ||||||| || || ||||| || | || ||| ||||| |||| || ||||| | Sbjct 1898860 AGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAAG 1898919 Query 58102 GTCTCCATACTGATTTTGCGTGCCT 58126 | | ||||| |||||||| || || Sbjct 1898920 GGATGCATACAGATTTTGCCTGTCT 1898944 Score = 134 bits (148), Expect = 1e-26 Identities = 371/563 (66%), Gaps = 13/563 (2%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | ||||||||||| || ||||| || || ||||| | |||||| | |||||| Sbjct 1897175 ATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTG 1897116 Query 57630 TCTAAGGATCTGAGCGATTGGGAT---TCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || ||||| ||| ||| || ||| || || |||| | | ||| | Sbjct 1897115 TCAAAAGATCTCCACGACTGGAATAACCGCCTTAACGACAATGAGCGTCACTTTGTCTCG 1897056 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || || | |||||||| ||||| || ||||| || || |||||||| | || || | Sbjct 1897055 CATGTCCTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCGC 1896996 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || | || || || | | | |||||| | ||||| ||||| || ||| | || Sbjct 1896995 TTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGATG 1896936 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGAC----AA 57862 ||||| | || || | || || || || |||||||| ||| | |||||| | Sbjct 1896935 GAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAAG 1896876 Query 57863 CGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGC 57922 | ||| || ||| || ||| | || | || || || ||| || | |||||| Sbjct 1896875 CAACGCGA---GTA-CCTTTTCGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGC 1896820 Query 57923 AGAGTGGTCAATCAAATGGAT-AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCG 57981 || ||| || | ||||| | || | | |||| || || ||| | || ||| Sbjct 1896819 GGACTGGGCACTACGCTGGATCTCCGATCGTCGC-TCCACATTTGCTGAGCGATTAGTCG 1896761 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041 | |||||||| || || || || ||||| || || || || |||| || ||| ||| Sbjct 1896760 CCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGA 1896701 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 |||| || ||||| ||||| || || || || ||| || | || || ||||||| Sbjct 1896700 AGAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGG 1896641 Query 58102 GTCTCCATACTGATTTTGCGTGC 58124 | | ||||| || || || ||| Sbjct 1896640 GAATGCATACCGACTTCGCATGC 1896618 >seq6 Length=2129081 Score = 109 bits (120), Expect = 5e-19 Identities = 157/215 (73%), Gaps = 5/215 (2%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| |||||||| |||| || || |||| Sbjct 300229 CATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAGTCGTC 300288 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| | || || || ||| | ||||||||| || | ||||| |||| Sbjct 300289 TGACACGATCGACAACGTGAAGGCAAAGATTCA-GGACAAGGAGGGTATCCCGCCTGACC 300347 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTAT 31369 ||||||| || || ||||||||||| || | || || | | | ||| | || || Sbjct 300348 AGCAGCGCCTCATTTTCGCTGGCAAGCAACTCGAGGA-TGGACGCACTCTTTCGGACTAC 300406 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCT-GGTAC 31403 || || || || || |||||||||||||| ||||| Sbjct 300407 AATATCCAGAAGGAGTCGACTCTTCATCTCGGTAC 300441 Score = 100 bits (110), Expect = 3e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 31191 ACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGT 31250 ||||||| || ||||| ||||| || || || || ||||||||| |||| || || | | Sbjct 299433 ACATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTT 299492 Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 | |||| |||| | || || || || ||||||||| || | || ||||||| Sbjct 299493 CGGACACCATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAGGGAATCCCCCCCGACC 299552 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||| | || ||||| ||||| ||| | || ||| || | || |||| Sbjct 299553 AGCAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATA 299612 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCT 31398 |||| || || || ||||| |||||||| Sbjct 299613 ACATCCAGAAGGAGTCGACCCTTCATCT 299640 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || ||||| ||||| || |||| || || | || Sbjct 300002 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 300061 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || || ||||| ||| | || || |||||| Sbjct 300062 GACACGATCGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAG 300121 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| ||||| ||| | |||||| ||| | ||| |||||| Sbjct 300122 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACTATAAC 300181 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || || || || | ||||| || ||| Sbjct 300182 ATTCAGAAGGAGTCCACCTTGCATCTCGTCCTT 300214 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| || || |||||||| |||| || || | || Sbjct 299719 CATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATC 299778 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||||||| ||| | || || ||||| Sbjct 299779 TGACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 299838 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| ||||| ||| | || ||| || | || ||||| Sbjct 299839 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTATAA 299898 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGG 31400 |||||| || || ||||| || ||| ||| Sbjct 299899 CATTCAGAAGGAGTCGACCCTCCATTTGG 299927 >seq1 Length=3320137 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||||||||||||| |||| || || |||||||| |||| || || | || Sbjct 2298396 CATGCAGATTTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTC 2298455 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | || || || || |||||||||||| | || |||||||| Sbjct 2298456 GGACACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 2298515 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || | || |||||||| || |||||||| || ||| | |||||| || Sbjct 2298516 GCAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAA 2298575 Query 31372 CATTCAAAAAGAATCGACTCTTCATCT 31398 ||||| ||||| || ||| | || || Sbjct 2298576 TATTCAGAAAGAGTCTACTTTGCACCT 2298602 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| ||||| || ||||| | || || || | || Sbjct 2298114 CATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTC 2298173 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | ||||| || || ||||||||| || | || |||||||| Sbjct 2298174 GGACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCA 2298233 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || |||||||| |||||| | || || Sbjct 2298234 GCAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGA 2298269 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || |||||||| || ||||| | || || || | || Sbjct 2298910 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACAATCACGTTGGAGGTAGAGTCTTCG 2298969 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || |||||||||||| | ||||| |||||| Sbjct 2298970 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAG 2299029 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || || ||||| || ||||| ||| | || | ||||| ||| Sbjct 2299030 CAACGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACAAC 2299089 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGG 31400 ||||| ||||| || || ||||||| Sbjct 2299090 ATTCAGAAAGAGAGCACCCTCCATCTGG 2299117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766321990880