Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3 156 6e-33 >seq3 Length=3024150 Score = 156 bits (172), Expect = 6e-33 Identities = 376/567 (66%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 |||| ||| |||||||| ||| || | |||||||| | ||| || | ||| ||||| Sbjct 1896610 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1896669 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || |||||||| ||||| ||||||||||| || | ||| || || || || || || || Sbjct 1896670 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1896729 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 36325 || |||||||| || || || || || ||||| | | || ||| || | || | Sbjct 1896730 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1896789 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | || ||||| | | ||||| || |||||| |||| ||||| || || ||||| Sbjct 1896790 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1896849 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 | ||||| || || || | || ||| || || | || ||||| || | ||| Sbjct 1896850 ACAGCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1896909 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 || | || || || ||||| || ||||| || |||||||| || | ||| Sbjct 1896910 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1896969 Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 || | ||| || || | | || || || | | || || || || || || ||| Sbjct 1896970 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCATCA 1897029 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTA----G 36621 ||| ||||||||||| | ||||| | ||| | || ||| |||| | Sbjct 1897030 GAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTC-ATTGTCGTTAAGGCG 1897088 Query 36622 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 36681 |||||||| || | || |||||| || | |||| ||||| | ||||| || || || Sbjct 1897089 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACGC 1897148 Query 36682 CTCTGCCTTTTTATACATATTCCAGAT 36708 || || ||||| ||||| | |||||| Sbjct 1897149 TTCAGCTTTTTTGTACATTTGCCAGAT 1897175 Score = 147 bits (162), Expect = 3e-30 Identities = 357/537 (66%), Gaps = 8/537 (1%) Strand=Plus/Minus Query 36179 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 36238 || ||||| | |||||| | |||||| ||||| || | || ||||| || || || || Sbjct 1898920 CCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTC 1898861 Query 36239 TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 36298 || ||||| || || || ||||| ||||| || ||||| || |||||||| ||||| || Sbjct 1898860 TTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAGATCCCTTCTACCGCCGCGAAC 1898801 Query 36299 GCAATAAGTCTCTCTCCATAAC--CGGCACT--GTCATGTATCCACTTTTGAGCCCAATC 36354 || | | ||| || ||| || | | |||| |||||| | | ||||| || Sbjct 1898800 GCTACCAACCTCGTGGCA-AACGTCGACCGTTGGTCAGAGATCCACCTGAGGGCCCACTC 1898742 Query 36355 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATT 36414 || ||||| || || || || || ||||| || | ||| ||||| | | | Sbjct 1898741 GGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATTGAAGAGGAGGCCACGCTGCTG 1898682 Query 36415 ACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 36474 | || | || ||||| || | ||| || ||||||| ||||||||||| || Sbjct 1898681 AGAGTCAGAGATGTAGGTATCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCAT 1898622 Query 36475 GGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCG 36534 ||||||||||| || ||||| | | || | |||||||| | |||| || Sbjct 1898621 CATGATTTGAAATCCATAAAAACAGCGGACTTCAGCGGCTTGTACTTCGCTCGAAAACCG 1898562 Query 36535 TTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTT 36594 || | | ||| || || || || ||||| || |||||||| |||| |||| | Sbjct 1898561 CTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCGGCAAAAAATGCCAGGACATATGA 1898502 Query 36595 TATAAAATATTTTTCGTTTGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATAT 36651 ||| |||| |||||| | || ||| ||||| || ||||||||| || || Sbjct 1898501 TATGAAATGGCGTTCGTTGTCATTCAGGTTATCGTTCCAGTCGAAGATATCTTTGGACAT 1898442 Query 36652 ATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 36708 ||| | ||||| |||||||| || |||| || || || ||||| | ||| || Sbjct 1898441 ATCGATCTCTTCGGACGTCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1898385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172684819760