Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 102 8e-17 seq6 86.0 6e-12 seq8 84.2 2e-11 >seq1 Length=3320137 Score = 102 bits (112), Expect = 8e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| |||||||| || || || || |||||| | |||| | || || ||||| Sbjct 2298318 GTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTG 2298259 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||||||||| |||| ||||| ||||| |||||||| || || || ||||| ||| | | Sbjct 2298258 TTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTC-CTGAATCT 2298200 Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | | || | | || | ||||| | | |||||| |||| || | |||||||| | Sbjct 2298199 TCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCG 2298140 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 |||| || || ||||| || ||||| Sbjct 2298139 TCAATGTCTTGACGAAGATCTGCAT 2298115 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| ||||| || |||||| | || | | || || | ||| || ||| Sbjct 2298593 GTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCA 2298534 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||||| |||||||| |||||||| || ||||| ||||| ||| | || | || Sbjct 2298533 GCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTC-CTGAATCTTCGCCTT 2298475 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | | ||| ||||| | || | |||||| || ||||| || Sbjct 2298474 CACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGT 2298415 Query 139747 TTTTACGAATATTTGCAT 139764 |||||||| || ||||| Sbjct 2298414 CTTTACGAAAATCTGCAT 2298397 >seq6 Length=2129081 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || ||||||||||| || | |||| ||| |||||||| || || Sbjct 299916 GTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCC 299857 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| || ||||| || || || ||||| || ||||| ||| || || Sbjct 299856 GCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 299797 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | ||||||||| | || | |||||| || |||||||| Sbjct 299796 ACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTC 299737 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 299736 TTCACGAAGATCTGCAT 299720 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || |||| ||| | || | || | || ||||| || ||||||||||| ||| Sbjct 300229 GCCTCCACGTAGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGAATGTTATAGTCGGA 300170 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| |||||||||||| || || || |||||| || ||||| || || || Sbjct 300169 AAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGG 300110 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||||| || || || ||| | || | || | | || | ||||| | | ||| | Sbjct 300109 AATGCCCTCCTTATC-TTGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGA 300051 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | || | ||||||||| || | || || ||||| ||||||||| Sbjct 300050 CCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCATA 300001 >seq8 Length=1850677 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| ||||| |||||||||||||| | |||| |||||||||||| || || Sbjct 435864 GTAGACTCCTTTTGGATGTTATAATCGCTGAGGGTGCGACCGTCTTCGAGCTGCTTTCCG 435923 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGC 139661 ||| | ||||| || ||||| ||||| || |||| Sbjct 435924 GCAAAAATCAGGCGCTGCTGGTCGGGTGGGATGC 435957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063913188800