Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3 125 1e-23 >seq3 Length=3024150 Score = 125 bits (138), Expect = 1e-23 Identities = 339/510 (66%), Gaps = 14/510 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| ||||||||||||| ||| | || || || ||||| | ||||||| | || ||| Sbjct 1897175 ATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTG 1897116 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || || || || |||| ||| | | || | | || | |||||| | ||| | ||| Sbjct 1897115 TCAAAAGATCTCCACGACTGGAATAACCGCCTTAACGACAATGAGCGTCACTTTGTCTCG 1897056 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197 || | | || || ||||||| ||| ||||| ||||||||||| || | |||||| || Sbjct 1897055 CATGTCCTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGA-GCG 1896997 Query 125198 ATTCTCTCAAGAGTTGACCATTC--CAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 ||||| | ||| | || | | |||| | ||||| ||||| |||||||| ||| Sbjct 1896996 CTTCTCGAACGAG--GTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATG 1896939 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC- 125314 || || || | ||| || | ||||| || || || | ||||| || || Sbjct 1896938 ATGGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCT 1896879 Query 125315 --GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAG 125372 |||||| | || || || | || | || || | || | | | | ||| Sbjct 1896878 AAGCAACGCGAGTAC---CTTTTCGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAG 1896822 Query 125373 GCTCAATGGGTGATTCGGTGGATCGATGA-CGACAAGTCTTCGTACGCCGACAGACTGGT 125431 || | |||| | || |||||| || || | || | | || || || | || Sbjct 1896821 GCGGACTGGGCACTACGCTGGATCTCCGATCGTC-GCTCCACATTTGCTGAGCGATTAGT 1896763 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCT 125491 || |||||||| || |||||||| ||||| || ||| ||| || | ||||| ||| | Sbjct 1896762 CGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTT 1896703 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||||||| || |||||||| ||||| || Sbjct 1896702 GAAGAAGCGTGGCCTCATGCCTGGACTCAC 1896673 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 125698 TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC 125757 ||||||||||||| |||||| |||||| ||||||| |||||||| ||||| ||||| | Sbjct 1896452 TGATTGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTTGCAGACCGTCTGC 1896393 Query 125758 TGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817 | | | |||| ||| |||||||| | || ||||| || || ||| || Sbjct 1896392 TCATTGCCCTCGGTGGCGAAAAGCACTACAACGCGACAAACCCCTTCGACTTTATGGACA 1896333 Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 || || | |||| ||||||||||| || |||||| Sbjct 1896332 TGATCTCTTTGCAGGGGAAGACCAACTTCTTTGAGAAG 1896295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059070314640