Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq3 125 1e-23
>seq3
Length=3024150
Score = 125 bits (138), Expect = 1e-23
Identities = 339/510 (66%), Gaps = 14/510 (3%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| ||||||||||||| ||| | || || || ||||| | ||||||| | || |||
Sbjct 1897175 ATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTG 1897116
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|| || || || |||| ||| | | || | | || | |||||| | ||| | |||
Sbjct 1897115 TCAAAAGATCTCCACGACTGGAATAACCGCCTTAACGACAATGAGCGTCACTTTGTCTCG 1897056
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197
|| | | || || ||||||| ||| ||||| ||||||||||| || | |||||| ||
Sbjct 1897055 CATGTCCTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGA-GCG 1896997
Query 125198 ATTCTCTCAAGAGTTGACCATTC--CAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255
||||| | ||| | || | | |||| | ||||| ||||| |||||||| |||
Sbjct 1896996 CTTCTCGAACGAG--GTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATG 1896939
Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC- 125314
|| || || | ||| || | ||||| || || || | ||||| || ||
Sbjct 1896938 ATGGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCT 1896879
Query 125315 --GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAG 125372
|||||| | || || || | || | || || | || | | | | |||
Sbjct 1896878 AAGCAACGCGAGTAC---CTTTTCGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAG 1896822
Query 125373 GCTCAATGGGTGATTCGGTGGATCGATGA-CGACAAGTCTTCGTACGCCGACAGACTGGT 125431
|| | |||| | || |||||| || || | || | | || || || | ||
Sbjct 1896821 GCGGACTGGGCACTACGCTGGATCTCCGATCGTC-GCTCCACATTTGCTGAGCGATTAGT 1896763
Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCT 125491
|| |||||||| || |||||||| ||||| || ||| ||| || | ||||| ||| |
Sbjct 1896762 CGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTT 1896703
Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGAC 125521
|||||||| || |||||||| ||||| ||
Sbjct 1896702 GAAGAAGCGTGGCCTCATGCCTGGACTCAC 1896673
Score = 87.8 bits (96), Expect = 3e-12
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 125698 TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC 125757
||||||||||||| |||||| |||||| ||||||| |||||||| ||||| ||||| |
Sbjct 1896452 TGATTGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTTGCAGACCGTCTGC 1896393
Query 125758 TGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817
| | | |||| ||| |||||||| | || ||||| || || ||| ||
Sbjct 1896392 TCATTGCCCTCGGTGGCGAAAAGCACTACAACGCGACAAACCCCTTCGACTTTATGGACA 1896333
Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855
|| || | |||| ||||||||||| || ||||||
Sbjct 1896332 TGATCTCTTTGCAGGGGAAGACCAACTTCTTTGAGAAG 1896295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741059070314640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |