Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6 131 4e-25 seq1 120 7e-22 seq3 111 4e-19 >seq6 Length=2129081 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| ||||| |||||||| || || | |||||| || || || || || || ||| Sbjct 300696 TCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAA 300637 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || || ||||| || ||||| || ||||||||||| || || ||||| Sbjct 300636 ATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTGACATTG 300577 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || || || ||||| || || || |||||||| || || || || ||| Sbjct 300576 TCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTACCCGTGAGGGTCTTGACA 300517 Query 104549 AATATCTGCATT 104560 || ||||||||| Sbjct 300516 AAGATCTGCATT 300505 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || ||||| ||||| ||||| || ||||| | || || || ||| Sbjct 300435 AGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGT 300376 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || ||||| ||||| || | ||| || ||||| || || || || || ||||||||| Sbjct 300375 TGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATC 300316 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 ||||| || || || || | || || | || ||||| || || || ||||| ||| Sbjct 300315 TTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCA 300256 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || |||||||| Sbjct 300255 GTCAGGGTCTTGACGAAGATCTGCAT 300230 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || ||||| || |||||||| || || || | ||||| || || Sbjct 299640 AGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGC 299581 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || || || || || | | ||| || || || || ||||| || || ||||||||| Sbjct 299580 TGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATC 299521 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || || || || || | ||| || || || ||||| || || || ||||| ||| Sbjct 299520 TTCGCCTTCACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCA 299461 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || |||||||| Sbjct 299460 GTGAGGGTCTTCACGAAGATCTGCAT 299435 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| ||||||||||| || || | ||||| || || || || || Sbjct 299916 GTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCC 299857 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || ||||| || || || || || ||||| ||||| || || Sbjct 299856 GCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 299797 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || | || ||||| || || || ||||| ||||| | || Sbjct 299796 ACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTC 299737 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 299736 TTCACGAAGATCTGCAT 299720 >seq1 Length=3320137 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 || || || ||||| |||||||||||||| || || || ||||||| || || || | Sbjct 2298602 AGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAAC 2298543 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || |||||||| || || | || || || || ||||| || ||||| || ||||||||| Sbjct 2298542 TGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATC 2298483 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || || || || || | || || || || ||||| || || || ||||| || Sbjct 2298482 TTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCC 2298423 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || | || ||||| || |||||||| Sbjct 2298422 GTCAAAGTCTTTACGAAAATCTGCAT 2298397 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||||||||| || || || || || || | |||||| || | ||| || || |||||| Sbjct 2299100 TCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAATTGCTTGCCCGCAAAA 2299041 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | || || || || || || ||||| || || |||||||| || || ||||| Sbjct 2299040 ATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTCACATTA 2298981 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || || |||||||| | || || ||||| || || || || || || Sbjct 2298980 TCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGCCTGTGAGGGTCTTGACG 2298921 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 2298920 AAGATCTGCAT 2298910 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| ||||| || || || || || | || || || || ||||| ||| Sbjct 2298311 GTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCA 2298252 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || || || || ||||||||||| || || Sbjct 2298251 GCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTG 2298192 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || || || || || || || || ||||| || || | ||| Sbjct 2298191 ACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTC 2298132 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 2298131 TTGACGAAGATCTGCAT 2298115 >seq3 Length=3024150 Score = 111 bits (122), Expect = 4e-19 Identities = 365/557 (66%), Gaps = 18/557 (3%) Strand=Plus/Minus Query 268742 ATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC 268801 ||||||||| | || | || ||||| ||||||| ||||| | || ||||| | || Sbjct 1897166 ATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTGTCAAAAGAT 1897107 Query 268802 TTAATAGATTGGAAAAAT----TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCT 268857 | || ||||| || |||| || | || | ||| | || || | || Sbjct 1897106 CTCCACGACTGGAATAACCGCCTTAACGACA-ATGAGCGTCACTTTGTCTCGCATGTCCT 1897048 Query 268858 TGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCA 268917 ||||||||||| | |||||| ||||| ||||| || || || ||| |||| | Sbjct 1897047 CGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCGCTTCTCGAA 1896988 Query 268918 AGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATAT 268977 ||||| ||| |||| || | || || ||||| ||||| || || |||||||| Sbjct 1896987 CGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGATGGAAAATAT 1896928 Query 268978 TCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAA 269037 || |||| ||| || | || |||||||| || | || || | || | Sbjct 1896927 CCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAA-GCAACGCG 1896869 Query 269038 AAGACTATTTTC--TTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGC 269094 | || ||||| | || | |||| | || |||||| | || || | || ||||| Sbjct 1896868 AGTACC-TTTTCGATGCTGTTGAGACC-ATTCCCTGTGTCAAAAGGAAGGCGGACTGGGC 1896811 Query 269095 TCTGAAATGGATAAACGATAG-CGCGCC----TTACGGAGAAAGGTTAGTTGCTTTTGCC 269149 || ||||| |||| | ||| || || | ||| | ||||| || || ||| Sbjct 1896810 ACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGA--TTAGTCGCCTTCGCC 1896753 Query 269150 GCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGA 269209 ||||| || || || ||||| || || ||||| ||| | ||||| ||||||||||| | Sbjct 1896752 GCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAAGAAGCGT 1896693 Query 269210 GGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACAC 269269 ||||| ||||| ||| | || ||||| || ||| | || || | ||||| || | || Sbjct 1896692 GGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGGAATGCAT 1896633 Query 269270 TGCGACTTCGCTTGTTT 269286 ||||||||| || || Sbjct 1896632 ACCGACTTCGCATGCTT 1896616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398193467912