Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq3 159 4e-34
>seq3
Length=3024150
Score = 159 bits (176), Expect = 4e-34
Identities = 380/568 (67%), Gaps = 10/568 (2%)
Strand=Plus/Minus
Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354
|||| | ||| || ||||| |||| || ||||| | |||||| |||||||| |||
Sbjct 1898950 AACAAGAGACAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1898891
Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414
|| || | || ||||| || || || || || ||||| || || ||||| || |||||
Sbjct 1898890 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1898831
Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGC 33472
|| |||||||| |||||||| || || || || | | ||| || ||| || |
Sbjct 1898830 GAGAAGAAGATCCCTTCTACCGCCGCGAACGCTACCAACCTCGTGGCA-AACGTCGACCG 1898772
Query 33473 T--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530
| |||| |||||| | | ||||| |||| ||||| || || || || || || ||
Sbjct 1898771 TTGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTC 1898712
Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33590
|| | ||| ||||| | | | | || | || |||||||| | ||
Sbjct 1898711 GATCGAATTGAAGAGGAGGCCACGCTGCTGAGAGTCAGAGATGTAGGTATCGATGAGGAG 1898652
Query 33591 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33650
| || ||||||| ||||||||||| || || |||||||| || ||||| | |
Sbjct 1898651 AGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGGAC 1898592
Query 33651 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTC 33710
|| | |||||||| | |||| || ||| ||| ||| || || || || |||||
Sbjct 1898591 TTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTC 1898532
Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTT 33769
|| |||||||| |||| |||| | ||| |||| ||||| || || || |
Sbjct 1898531 GGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGT-TGTCATTCAGGT 1898473
Query 33770 TA---TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 33826
|| ||||| || ||||||||| || ||||| | ||||| |||||||| || |
Sbjct 1898472 TATCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAG 1898413
Query 33827 CCTCTGCCTTTTTATACATGTTCCAGAT 33854
||| || || || ||||| | ||| ||
Sbjct 1898412 CCTGGGCTTTCTTGTACATCTGCCAAAT 1898385
Score = 156 bits (172), Expect = 5e-33
Identities = 376/567 (66%), Gaps = 8/567 (1%)
Strand=Plus/Plus
Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354
|||| ||| |||||||| ||| |||| |||||||| | ||| || ||||| |||||
Sbjct 1896610 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1896669
Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414
|| |||||||| ||||| ||||||||||| || | ||| || || || ||||| || ||
Sbjct 1896670 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1896729
Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--- 33471
|| ||||| || || || || || || ||||| | | || ||| || | || |
Sbjct 1896730 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1896789
Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531
| || ||||| | | ||||| || |||||| |||| ||||| || || || ||
Sbjct 1896790 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1896849
Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591
| |||| || || || | || ||| || || | ||||||||||| | |||
Sbjct 1896850 ACAGCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1896909
Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651
|| | || || || ||||| || || || || |||||||| || | |||
Sbjct 1896910 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1896969
Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCA 33711
|| | ||| || || | | || || || | | || || || || || || |||
Sbjct 1896970 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCATCA 1897029
Query 33712 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----G 33767
||| ||||||||||| | ||||| | ||| | || | || |||| |
Sbjct 1897030 GAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCAT-TGTCGTTAAGGCG 1897088
Query 33768 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 33827
|||||||| || | || |||||| || | || | ||||| | ||||| || || ||
Sbjct 1897089 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACGC 1897148
Query 33828 CTCTGCCTTTTTATACATGTTCCAGAT 33854
|| || ||||| ||||| | ||||||
Sbjct 1897149 TTCAGCTTTTTTGTACATTTGCCAGAT 1897175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622947090984240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |