Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq9 104 2e-17 seq1 91.5 1e-13 seq6 89.7 3e-13 >seq9 Length=1678725 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1371412 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 1371353 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 1371352 GCCAATATTTAGCTTTA 1371336 >seq1 Length=3320137 Score = 91.5 bits (100), Expect = 1e-13 Identities = 176/260 (68%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||| |||| || || || ||||| || |||||||| || ||||||| | || || || Sbjct 3297700 AAGATCGAAGGCAAAGGCAACGGCATCAAAACCGTGATCCCCAACATGTCCGACGTAGCG 3297641 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 || || ||||| ||||||||||||| |||| ||||| | || || || || Sbjct 3297640 CGCGCACTTTCCCGCCCGCCCACCTACCCGACCAAATTCTTCGGCTCTGAGCTCGGTGCG 3297581 Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC 6413 |||||| | || | || ||||| || | |||||| || || |||| | | ||| Sbjct 3297580 CAGACGACCGTCGACGAGAAGAACGACCGTTACATCGTCAATGGCGCGCACGATGCCGCC 3297521 Query 6414 AAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGAT 6473 |||| || | || || | || || |||||| |||||||| | | ||| | Sbjct 3297520 CGCCTGCGCGAGCTCCTCGATGCGTTCATCGACAAGTTCGTGCTGTGCGGCGCGTGCAAG 3297461 Query 6474 AACCCGGAGACCGAGCTTAT 6493 ||||||||||| || || || Sbjct 3297460 AACCCGGAGACGGACCTCAT 3297441 >seq6 Length=2129081 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 38108 CACCAAA-TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGT 38166 |||||| ||||| ||||||||||| || |||||||| ||||||| || |||| | Sbjct 300716 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCT 300657 Query 38167 CTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCA 38226 | | || || || || || || ||||| || || |||| || | ||||| |||||| Sbjct 300656 CGAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 300597 Query 38227 TAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTT 38286 ||| || ||| ||||| | || || || | || || || | || || || | Sbjct 300596 GAATCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCT 300537 Query 38287 TACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| | ||| || || || |||||||| Sbjct 300536 TACCCGTGAGGGTCTTGACAAAGATCTGCAT 300506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947142849634