Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3 159 4e-34 >seq3 Length=3024150 Score = 159 bits (176), Expect = 4e-34 Identities = 377/567 (66%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| ||| |||||||| ||| || | |||||||| | ||| || | ||| ||||| Sbjct 1896610 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1896669 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || |||||||| ||||| ||||||||||| || | ||| || || || || || || || Sbjct 1896670 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1896729 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--- 32828 || |||||||| || || || || || ||||| | | || ||| || | || | Sbjct 1896730 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1896789 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | || ||||| | | ||||| || |||||| |||| ||||| || || ||||| Sbjct 1896790 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1896849 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 | ||||| || || || | || ||| || || | || ||||| || | ||| Sbjct 1896850 ACAGCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1896909 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 || | || || || ||||| || ||||| || ||||||||||| | ||| Sbjct 1896910 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1896969 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 || | ||| || || | | || || || | | || || || || || || ||| Sbjct 1896970 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCATCA 1897029 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----G 33124 ||| ||||||||||| | ||||| | ||| | || | || |||| | Sbjct 1897030 GAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCAT-TGTCGTTAAGGCG 1897088 Query 33125 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 33184 |||||||| || | || |||||| || | |||| ||||| | ||||| || || || Sbjct 1897089 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACGC 1897148 Query 33185 CTCTGCCTTTTTATACATATTCCAGAT 33211 || || ||||| ||||| | |||||| Sbjct 1897149 TTCAGCTTTTTTGTACATTTGCCAGAT 1897175 Score = 141 bits (156), Expect = 1e-28 Identities = 358/538 (67%), Gaps = 10/538 (2%) Strand=Plus/Minus Query 32682 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 32741 || ||||| | |||||| | |||||| ||||| || | || ||||| || || || || Sbjct 1898920 CCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTC 1898861 Query 32742 TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 32801 || ||||| || || || ||||| ||||| || ||||| || |||||||| ||||| || Sbjct 1898860 TTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAGATCCCTTCTACCGCCGCGAAC 1898801 Query 32802 GCAATAAGTCTCTCTCCATAAC--CGGCGCT--GTCATGTATCCACTTTTGAGCCCAATC 32857 || | | ||| || ||| || | | |||| |||||| | | ||||| || Sbjct 1898800 GCTACCAACCTCGTGGCA-AACGTCGACCGTTGGTCAGAGATCCACCTGAGGGCCCACTC 1898742 Query 32858 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATT 32917 || ||||| || || || || || ||||| || | ||| ||||| | | | Sbjct 1898741 GGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATTGAAGAGGAGGCCACGCTGCTG 1898682 Query 32918 ACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 32977 | || | || ||||| || | ||| || ||||||| ||||||||||| || Sbjct 1898681 AGAGTCAGAGATGTAGGTATCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCAT 1898622 Query 32978 GGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCG 33037 ||||||||||| || || || | | || | |||||||| | |||| || Sbjct 1898621 CATGATTTGAAATCCATAAAAACAGCGGACTTCAGCGGCTTGTACTTCGCTCGAAAACCG 1898562 Query 33038 TTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTT 33097 || | | ||| || || || || ||||| || |||||||| |||| |||| | Sbjct 1898561 CTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCGGCAAAAAATGCCAGGACATATGA 1898502 Query 33098 TATAAAATATTTTTCGTCTGGTGTT-AGTTTA---TTCCAATCATTGATATCTTTAGATA 33153 ||| |||| ||||| || || || ||| ||||| || ||||||||| || | Sbjct 1898501 TATGAAATGGCGTTCGT-TGTCATTCAGGTTATCGTTCCAGTCGAAGATATCTTTGGACA 1898443 Query 33154 TATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 |||| | ||||| |||||||| || |||| || || || ||||| | ||| || Sbjct 1898442 TATCGATCTCTTCGGACGTCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1898385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631889114400