Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq1 120 3e-22
seq6 111 1e-19
>seq1
Length=3320137
Score = 120 bits (132), Expect = 3e-22
Identities = 147/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || |||||||||||||| || || | ||||| |||| || ||||| ||
Sbjct 2298397 ATGCAGATTTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2298456
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||||| || |||| || || | ||| ||||| ||||||||||| || |||||
Sbjct 2298457 GACACTATTGACAACGTGAAGGCGAAGATTCA-GGACAAGGAAGGGATTCCTCCCGACCA 2298515
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| ||| | || || || || || || || || |||| || ||| | |||||||||
Sbjct 2298516 GCAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAA 2298575
Query 25178 TATTCAAAAAGAATCCAC 25195
|||||| ||||| || ||
Sbjct 2298576 TATTCAGAAAGAGTCTAC 2298593
Score = 107 bits (118), Expect = 2e-18
Identities = 149/206 (72%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||| || || ||||||| | ||||||||||| ||
Sbjct 2298115 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2298174
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||||||||| || || | || || | ||| ||||| || || || || || |||
Sbjct 2298175 GACACTATCGA--CAATGTCAAGGCGAAGATTCA-GGACAAGGAGGGTATCCCTCCCGAC 2298231
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| |||| || || || ||||| | || |||| ||||| | |||||||
Sbjct 2298232 CAGCAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCCGATTAC 2298291
Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201
||||| || || || || || || ||
Sbjct 2298292 AATATCCAGAAGGAGTCTACCCTTCA 2298317
>seq6
Length=2129081
Score = 111 bits (122), Expect = 1e-19
Identities = 149/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| |||| || || | ||||| |||| || |||||||||
Sbjct 300230 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAGTCGTCT 300289
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| ||||| |||| ||||| | ||| ||||| || || || || ||||||||
Sbjct 300290 GACACGATCGACAACGTGAAGGCAAAGATTCA-GGACAAGGAGGGTATCCCGCCTGACCA 300348
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | ||||| || ||||| ||| | || |||| |||||| | || |||||
Sbjct 300349 GCAGCGCCTCATTTTCGCTGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAA 300408
Query 25178 TATTCAAAAAGAATCCACGCTACAT 25202
||| || || || || || || |||
Sbjct 300409 TATCCAGAAGGAGTCGACTCTTCAT 300433
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| ||||| | || ||||| | ||||| | || || ||||| ||
Sbjct 300505 AATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACAATCACGCTGGAGGTCGAGTCTTC 300564
Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| ||||| || || | || || | ||| ||||| ||||||||||| || ||
Sbjct 300565 GGACACGATCGA--CAATGTCAAGGCGAAGATTCAG-GACAAGGAAGGGATTCCTCCCGA 300621
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| ||||| | ||||| || ||||| || | || || | |||||| || || ||
Sbjct 300622 CCAGCAGCGCCTCATTTTCGCGGGCAAGCAGCTCGAGGACGGTCGCACCCTGTCTGACTA 300681
Query 25175 CAATATTCAAAAAGA 25189
|||||| || || ||
Sbjct 300682 CAATATCCAGAAGGA 300696
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327926063410
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |