Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq1 123 2e-23
seq6 86.0 5e-12
>seq1
Length=3320137
Score = 123 bits (136), Expect = 2e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || || || || || |||||||||||||||| | |
Sbjct 2298115 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2298174
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| || |||| || ||||| |||||||||||||| || ||||| ||
Sbjct 2298175 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 2298234
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| |||||||| || || || |||||| | |||||| ||||| | |||||||||||
Sbjct 2298235 CAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCCGATTACAAT 2298294
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || || || || |||
Sbjct 2298295 ATCCAGAAGGAGTCTACC 2298312
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || ||||| || || || ||| ||||||| || || || | |
Sbjct 2298397 ATGCAGATTTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2298456
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | | || || ||||| |||||||| || ||||| ||||| ||
Sbjct 2298457 GACACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCAG 2298516
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||||| | || || || || || ||||| |||||| || || |||||||||||||
Sbjct 2298517 CAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAAT 2298576
Query 22399 ATTCAAAAAGAATCCAC 22415
||||| ||||| || ||
Sbjct 2298577 ATTCAGAAAGAGTCTAC 2298593
Score = 86.0 bits (94), Expect = 5e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| |||||||||||||| || || || || || || ||||| || || ||||| |||||
Sbjct 2298994 AAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAGCAACGCCTGATTTTTGCGGGCAAG 2299053
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
|| || ||||| ||||| | || |||||||||||||| ||||| |||| | |||
Sbjct 2299054 CAATTGGAGGACGGTCGCACACTTTCGGATTACAACATTCAGAAAGAGAGCACCCTCCAT 2299113
>seq6
Length=2129081
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270
|| || | ||||| || || || || || | || || || ||| |||| || || ||||
Sbjct 299427 TTATAGACATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGG 299486
Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330
| | | || ||| | || | | || || ||||| ||||||||||| || || |
Sbjct 299487 AGTCTTCGGACACCATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAGGGAATCCCCC 299546
Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390
|||| || || ||| | || || || ||||| ||| | ||||| ||||||| | || |
Sbjct 299547 CCGACCAGCAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGG 299606
Query 22391 ATTACAACATTCAAAAAGAATCCACCATACAT 22422
| || ||||| || || || || ||| | |||
Sbjct 299607 ACTATAACATCCAGAAGGAGTCGACCCTTCAT 299638
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || || || || ||| |||| || || ||||| | |
Sbjct 299720 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATCT 299779
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || | |||| || || || ||||||||||| || || || || ||
Sbjct 299780 GACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 299839
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || || || ||||| ||| | ||||| ||||||| | || || || |||
Sbjct 299840 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTATAAC 299899
Query 22399 ATTCAAAAAGAATCCACCATACATTT 22424
||||| || || || ||| | |||||
Sbjct 299900 ATTCAGAAGGAGTCGACCCTCCATTT 299925
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727928383910
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |