Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6 100 6e-16 seq3 95.1 2e-14 seq2 95.1 2e-14 seq9 84.2 4e-11 >seq6 Length=2129081 Score = 100 bits (110), Expect = 6e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 279704 TCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGA 279763 ||| || |||||||||||||||||||| |||||| | |||||||| | | ||||| Sbjct 621076 TCTCTCTGGTGGTTGGAAGATGAAGCTCGCCCTCGCCCGCGCCATGTTGTTCAAGGCCGA 621017 Query 279764 TGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGT 279823 |||| |||| || ||||| || |||||| ||||| |||||| |||||| | | Sbjct 621016 CATCCTGTTGCTCGACGAGCCCACTAACCACTTGGACGTTGTCAACGTTGCCTGGTTGGA 620957 Query 279824 GTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTT 279883 | |||| | ||| | || | | | ||| |||| ||||| |||||||| ||||| Sbjct 620956 GAACTACTTGACCGGCCTCACCCACTGCACGTCCATCATCGTCTCGCACGACTCCGGCTT 620897 Query 279884 CCT 279886 ||| Sbjct 620896 CCT 620894 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 280172 TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC 280231 |||| | || ||||| ||| | || ||||| || || ||||| | || |||| |||| Sbjct 620605 TGTCCTCGGCCCCAACGGTTCCGGAAAGTCGACGCTCGTCAAATTGCTCACTGCGGAGAT 620546 Query 280232 CCAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 || | | |||| || | | |||||||| |||||| || || | ||| || || Sbjct 620545 GGAGCCGAACAAGGGTGGTGAGGTGTGGAAGCACCCCAACTTGGTCATCGGTTATGTTGC 620486 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348 |||||||| |||||||||||||| ||||| || |||| ||| || | | ||||| Sbjct 620485 CCAGCACGCCTTCCACCACATCGATAACCATCTCGACAAGACGCCCCTCGAGTACATGTT 620426 Query 280349 GTGGCGCTA 280357 |||||| || Sbjct 620425 GTGGCGTTA 620417 >seq3 Length=3024150 Score = 95.1 bits (104), Expect = 2e-14 Identities = 116/157 (74%), Gaps = 6/157 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | ||| |||| || |||||| | ||||| ||||||||||||||||| Sbjct 1896299 TCAAAGAAGTTGGTCTTCCCCTGCAAAGAGATCATGTCCATAAAGTCGAAGGGGTTTGTC 1896358 Query 251623 GCATTGTACTGCTTGGGATGGCCA---AGTGCTACGAAGATGCGGTCTGCCACAAACTCC 251679 || ||||| ||||| | |||| || || | || | |||||||| |||||||| Sbjct 1896359 GCGTTGTAGTGCTT---TTCGCCACCGAGGGCAATGAGCAGACGGTCTGCAACAAACTCG 1896415 Query 251680 AGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCA 251716 | ||||| | ||| || | | ||||||||||||| Sbjct 1896416 ATGTACTGGCACATGAGCTTGGCATTCATGCCAATCA 1896452 >seq2 Length=2980060 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 || || |||||||||||||||||||| || ||| |||| || || || | |||||| Sbjct 528514 CTTTCTGGTGGTTGGAAGATGAAGCTCGCTCTCGCTCGTGCGATGCTCTTCAAGGCCGAT 528455 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824 |||| |||| |||||||| || ||||| |||| | |||||| |||||||| | Sbjct 528454 ATCCTCTTGCTCGATGAGCCGACTAACCATTTGGATGTCGTCAACGTTGCCTGGCTCGAA 528395 Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884 |||||| || | || | | |||| |||| ||||| ||||||||||| || Sbjct 528394 AGCTACCTCACTGGCCTTACCCACTGCACTTCGATCATCGTCTCGCACGACTCTGGGTTT 528335 Query 279885 CT 279886 || Sbjct 528334 CT 528333 Score = 93.3 bits (102), Expect = 9e-14 Identities = 148/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 280172 TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC 280231 |||| |||| || ||||| | || || || || || |||| | || |||||||||| Sbjct 528044 TGTCCTTGGCCCTAATGGCTCCGGCAAATCCACGCTCGTCAAGTTGCTTACTGGCGAGAT 527985 Query 280232 CCAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 |||||| |||| || | | |||||||| || ||| || || | || ||||| Sbjct 527984 GGAGGCCAACAAGGGCGGTGAGGTGTGGAAGCACCCGAACTTGGTCATCGGCTATGTCGC 527925 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348 || ||||||||||||||||| || ||||||| |||| ||| ||| | ||||| | Sbjct 527924 CCAACACGCTTTCCACCACATTGATCACCACCTCGACAAGACGCCTTTGGAGTACATGCT 527865 Query 280349 GTGGCGCTATGCAAGTGGGCAGGATCTGGA 280378 ||||| ||| | || |||||||||| Sbjct 527864 CTGGCGGTATCAGACGGGTGAGGATCTGGA 527835 >seq9 Length=1678725 Score = 84.2 bits (92), Expect = 4e-11 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 218654 TTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGC 218713 || |||| |||||| | |||||| | ||||| | ||| |||||||| ||||| | Sbjct 1434911 TTTAGGTTGCTCAGCTAGTCGGTTATATTTCCGAGCATGCTGCGTACCATCATGGTGAAC 1434852 Query 218714 AGAGTCTGCAGGGTGCC-ATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATG 218772 ||||| || | | || | ||||| |||| || ||||| || || || |||||| || Sbjct 1434851 AGAGTTTG-ATGATGACGATTGTCAATTTGGCGCAAGACTACGTCGGAAGCAACAACTTG 1434793 Query 218773 AACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCT 218832 ||| || || | || || ||||||| || |||| ||||| || ||| ||| Sbjct 1434792 AACCTGTTGTTACCGAATGGTCAGTACGGAACTCGCGACCAAGGTGGTAAAGATCATGCC 1434733 Query 218833 TCTGCCAGGTATATCTTTAC 218852 | |||||||||||||| || Sbjct 1434732 GCGGCCAGGTATATCTTCAC 1434713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836615631774