Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq6 100 6e-16
seq3 95.1 2e-14
seq2 95.1 2e-14
seq9 84.2 4e-11
>seq6
Length=2129081
Score = 100 bits (110), Expect = 6e-16
Identities = 132/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 279704 TCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGA 279763
||| || |||||||||||||||||||| |||||| | |||||||| | | |||||
Sbjct 621076 TCTCTCTGGTGGTTGGAAGATGAAGCTCGCCCTCGCCCGCGCCATGTTGTTCAAGGCCGA 621017
Query 279764 TGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGT 279823
|||| |||| || ||||| || |||||| ||||| |||||| |||||| | |
Sbjct 621016 CATCCTGTTGCTCGACGAGCCCACTAACCACTTGGACGTTGTCAACGTTGCCTGGTTGGA 620957
Query 279824 GTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTT 279883
| |||| | ||| | || | | | ||| |||| ||||| |||||||| |||||
Sbjct 620956 GAACTACTTGACCGGCCTCACCCACTGCACGTCCATCATCGTCTCGCACGACTCCGGCTT 620897
Query 279884 CCT 279886
|||
Sbjct 620896 CCT 620894
Score = 87.8 bits (96), Expect = 4e-12
Identities = 134/189 (71%), Gaps = 3/189 (2%)
Strand=Plus/Minus
Query 280172 TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC 280231
|||| | || ||||| ||| | || ||||| || || ||||| | || |||| ||||
Sbjct 620605 TGTCCTCGGCCCCAACGGTTCCGGAAAGTCGACGCTCGTCAAATTGCTCACTGCGGAGAT 620546
Query 280232 CCAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288
|| | | |||| || | | |||||||| |||||| || || | ||| || ||
Sbjct 620545 GGAGCCGAACAAGGGTGGTGAGGTGTGGAAGCACCCCAACTTGGTCATCGGTTATGTTGC 620486
Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348
|||||||| |||||||||||||| ||||| || |||| ||| || | | |||||
Sbjct 620485 CCAGCACGCCTTCCACCACATCGATAACCATCTCGACAAGACGCCCCTCGAGTACATGTT 620426
Query 280349 GTGGCGCTA 280357
|||||| ||
Sbjct 620425 GTGGCGTTA 620417
>seq3
Length=3024150
Score = 95.1 bits (104), Expect = 2e-14
Identities = 116/157 (74%), Gaps = 6/157 (4%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|| ||||| || | ||| |||| || |||||| | ||||| |||||||||||||||||
Sbjct 1896299 TCAAAGAAGTTGGTCTTCCCCTGCAAAGAGATCATGTCCATAAAGTCGAAGGGGTTTGTC 1896358
Query 251623 GCATTGTACTGCTTGGGATGGCCA---AGTGCTACGAAGATGCGGTCTGCCACAAACTCC 251679
|| ||||| ||||| | |||| || || | || | |||||||| ||||||||
Sbjct 1896359 GCGTTGTAGTGCTT---TTCGCCACCGAGGGCAATGAGCAGACGGTCTGCAACAAACTCG 1896415
Query 251680 AGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCA 251716
| ||||| | ||| || | | |||||||||||||
Sbjct 1896416 ATGTACTGGCACATGAGCTTGGCATTCATGCCAATCA 1896452
>seq2
Length=2980060
Score = 95.1 bits (104), Expect = 2e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764
|| || |||||||||||||||||||| || ||| |||| || || || | ||||||
Sbjct 528514 CTTTCTGGTGGTTGGAAGATGAAGCTCGCTCTCGCTCGTGCGATGCTCTTCAAGGCCGAT 528455
Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824
|||| |||| |||||||| || ||||| |||| | |||||| |||||||| |
Sbjct 528454 ATCCTCTTGCTCGATGAGCCGACTAACCATTTGGATGTCGTCAACGTTGCCTGGCTCGAA 528395
Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884
|||||| || | || | | |||| |||| ||||| ||||||||||| ||
Sbjct 528394 AGCTACCTCACTGGCCTTACCCACTGCACTTCGATCATCGTCTCGCACGACTCTGGGTTT 528335
Query 279885 CT 279886
||
Sbjct 528334 CT 528333
Score = 93.3 bits (102), Expect = 9e-14
Identities = 148/210 (70%), Gaps = 3/210 (1%)
Strand=Plus/Minus
Query 280172 TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC 280231
|||| |||| || ||||| | || || || || || |||| | || ||||||||||
Sbjct 528044 TGTCCTTGGCCCTAATGGCTCCGGCAAATCCACGCTCGTCAAGTTGCTTACTGGCGAGAT 527985
Query 280232 CCAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288
|||||| |||| || | | |||||||| || ||| || || | || |||||
Sbjct 527984 GGAGGCCAACAAGGGCGGTGAGGTGTGGAAGCACCCGAACTTGGTCATCGGCTATGTCGC 527925
Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348
|| ||||||||||||||||| || ||||||| |||| ||| ||| | ||||| |
Sbjct 527924 CCAACACGCTTTCCACCACATTGATCACCACCTCGACAAGACGCCTTTGGAGTACATGCT 527865
Query 280349 GTGGCGCTATGCAAGTGGGCAGGATCTGGA 280378
||||| ||| | || ||||||||||
Sbjct 527864 CTGGCGGTATCAGACGGGTGAGGATCTGGA 527835
>seq9
Length=1678725
Score = 84.2 bits (92), Expect = 4e-11
Identities = 140/200 (70%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 218654 TTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGC 218713
|| |||| |||||| | |||||| | ||||| | ||| |||||||| ||||| |
Sbjct 1434911 TTTAGGTTGCTCAGCTAGTCGGTTATATTTCCGAGCATGCTGCGTACCATCATGGTGAAC 1434852
Query 218714 AGAGTCTGCAGGGTGCC-ATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATG 218772
||||| || | | || | ||||| |||| || ||||| || || || |||||| ||
Sbjct 1434851 AGAGTTTG-ATGATGACGATTGTCAATTTGGCGCAAGACTACGTCGGAAGCAACAACTTG 1434793
Query 218773 AACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCT 218832
||| || || | || || ||||||| || |||| ||||| || ||| |||
Sbjct 1434792 AACCTGTTGTTACCGAATGGTCAGTACGGAACTCGCGACCAAGGTGGTAAAGATCATGCC 1434733
Query 218833 TCTGCCAGGTATATCTTTAC 218852
| |||||||||||||| ||
Sbjct 1434732 GCGGCCAGGTATATCTTCAC 1434713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836615631774
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |