Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq3 188 1e-42
seq5 89.7 1e-12
>seq3
Length=3024150
Score = 188 bits (208), Expect = 1e-42
Identities = 322/462 (70%), Gaps = 19/462 (4%)
Strand=Plus/Minus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| || || || ||||||||||| ||||| ||||| |||||||| | | ||| |
Sbjct 1897049 CTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCGCTTCTCG 1896990
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542
|| ||||| ||| ||||||||| ||||||||||| ||||| || || || ||
Sbjct 1896989 AACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGATGGAAAAT 1896930
Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC----CGTCGA 42598
| ||| ||| ||| || || || | || |||||| ||| || | ||
Sbjct 1896929 ATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAAGCAACGC 1896870
Query 42599 GCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658
| ||| | | ||| | || | ||||| || ||||| |||| | ||||||||||||
Sbjct 1896869 GAGTACC----TTTTCGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGCGGACTG 1896814
Query 42659 GGCGCTCAACTGGATC---GAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715
||| || ||||||| || ||| | | || || | ||| | | || |||||
Sbjct 1896813 GGCACTACGCTGGATCTCCGATCGTCGCTCCACA---TTTGCTGAGCGATTAGTCGCCTT 1896757
Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775
|||| || |||||||| |||||||| || | |||||||| ||||||||| | ||| |
Sbjct 1896756 CGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAAGAA 1896697
Query 42776 GAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834
| || || ||||| |||||||||||||| || ||||||||||| | ||||||||
Sbjct 1896696 GCGTGGCCTC-ATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGGAA 1896638
Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCA 42876
|||||| ||||| || ||| | |||||| ||||| ||||
Sbjct 1896637 TGCATACCGACTTCGCATGCTTGCTGTTC---AGCCATCTCA 1896599
Score = 149 bits (164), Expect = 1e-30
Identities = 377/563 (67%), Gaps = 13/563 (2%)
Strand=Plus/Plus
Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368
||||||||||| || ||| || ||||| |||| ||||| || || |||| ||
Sbjct 1898394 ATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATGTCCAAAGAT 1898453
Query 42369 ACGGCCGGCTGGGAG--TCAC-TGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTG 42425
| || |||| | | || || ||| |||||| |||| | | | | |||
Sbjct 1898454 ATCTTCGACTGGAACGATAACCTGAATGACAACGAACGCCATTTCATATCATATGTCCTG 1898513
Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485
|| || || ||||| || ||||| || ||||| ||||| |||| |||| ||
Sbjct 1898514 GCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCGGTTTTCGAGC 1898573
Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545
|| || || | ||| | ||||| || || || || || || || || ||| |
Sbjct 1898574 GAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCATGATGGAAAACATT 1898633
Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATC-CTGGATCCCGTCGAGCGTAA 42604
||||| || ||| | || || | || |||||| ||| || | | |||||
Sbjct 1898634 CACTCGGAAACATACTCTCTCCTCATCGATACCTACATCTCTGACTCTCAGC-AGCGTGG 1898692
Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664
| || ||||| | || ||||| || || ||| ||||| ||||| | || ||||| ||
Sbjct 1898693 CCTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAGACCGAGTGGGCCCT 1898752
Query 42665 CAACTGGATCGA-GAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721
|| |||||| || || ||| | ||||| | | |||| ||||||| || | ||
Sbjct 1898753 CAGGTGGATCTCTGA---CCAACGGTCGACGTTTGCCACGAGGTTGGTAGCGTTCGCGGC 1898809
Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGG 42780
|| || || ||||||||||| || | || || || ||||||||||| ||| | |||
Sbjct 1898810 GGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTGAAGAAACGAGG 1898869
Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840
| || ||||| || | ||||| || |||||||| || || ||||||| ||| ||||||
Sbjct 1898870 TCTC-ATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAAGGGATGCATA 1898928
Query 42841 GGGACTTTGCCTGCCTCCTGTTC 42863
|| |||||||| ||| |||||
Sbjct 1898929 CAGATTTTGCCTGTCTCTTGTTC 1898951
>seq5
Length=2324656
Score = 89.7 bits (98), Expect = 1e-12
Identities = 201/295 (68%), Gaps = 8/295 (3%)
Strand=Plus/Minus
Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACG--GGGCTGCCCTCGTAGGTCGGGT 244355
||||| | |||||| |||| || || | | |||| |||||||| ||||| || ||
Sbjct 535905 CCCCAAAGGTCAAATTGCAACAAGCCTTCG--GACGCAGGGCTGCCAGAGTAGGACGAGT 535848
Query 244356 AGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTC 244414
| || || || || |||| || ||| || | || | ||||| | ||| || |||
Sbjct 535847 ACGGGCCATCTTTCTCAGCCATCTCGACA-CTAGCTTCCACAGCGGCATGGTATATTGTC 535789
Query 244415 TCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATC 244474
||||||||| || |||| | ||| |||| | | || || |||| || |||
Sbjct 535788 TCGAAGATCTGCTGATTCAGCTTGCGCGCCTGCTCTGATTCAAAAGGCATGCGCAAGATC 535729
Query 244475 ATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGG-A 244533
||||| || || || ||||||||||||| || || || | ||| ||| |||||| |
Sbjct 535728 ATGAAAGTATCCGCAAGACCCTGCACGCCGAGACCAATAGGGCGGTGACGCATGTTGGAA 535669
Query 244534 GCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588
| || | || || |||||||| ||||| ||||||| | ||| ||||||
Sbjct 535668 TTACGTGAC-TCAGGAACGGGGTAGTAGTTGACGTCGATGATACGGTTCAGGTTG 535615
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944339034740640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |