Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 188 1e-42 seq5 89.7 1e-12 >seq3 Length=3024150 Score = 188 bits (208), Expect = 1e-42 Identities = 322/462 (70%), Gaps = 19/462 (4%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || || || ||||||||||| ||||| ||||| |||||||| | | ||| | Sbjct 1897049 CTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCGCTTCTCG 1896990 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || ||||| ||| ||||||||| ||||||||||| ||||| || || || || Sbjct 1896989 AACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGATGGAAAAT 1896930 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC----CGTCGA 42598 | ||| ||| ||| || || || | || |||||| ||| || | || Sbjct 1896929 ATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAAGCAACGC 1896870 Query 42599 GCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658 | ||| | | ||| | || | ||||| || ||||| |||| | |||||||||||| Sbjct 1896869 GAGTACC----TTTTCGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGCGGACTG 1896814 Query 42659 GGCGCTCAACTGGATC---GAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 ||| || ||||||| || ||| | | || || | ||| | | || ||||| Sbjct 1896813 GGCACTACGCTGGATCTCCGATCGTCGCTCCACA---TTTGCTGAGCGATTAGTCGCCTT 1896757 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 |||| || |||||||| |||||||| || | |||||||| ||||||||| | ||| | Sbjct 1896756 CGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAAGAA 1896697 Query 42776 GAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 | || || ||||| |||||||||||||| || ||||||||||| | |||||||| Sbjct 1896696 GCGTGGCCTC-ATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGGAA 1896638 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCA 42876 |||||| ||||| || ||| | |||||| ||||| |||| Sbjct 1896637 TGCATACCGACTTCGCATGCTTGCTGTTC---AGCCATCTCA 1896599 Score = 149 bits (164), Expect = 1e-30 Identities = 377/563 (67%), Gaps = 13/563 (2%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||||||||| || ||| || ||||| |||| ||||| || || |||| || Sbjct 1898394 ATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATGTCCAAAGAT 1898453 Query 42369 ACGGCCGGCTGGGAG--TCAC-TGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTG 42425 | || |||| | | || || ||| |||||| |||| | | | | ||| Sbjct 1898454 ATCTTCGACTGGAACGATAACCTGAATGACAACGAACGCCATTTCATATCATATGTCCTG 1898513 Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 || || || ||||| || ||||| || ||||| ||||| |||| |||| || Sbjct 1898514 GCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCGGTTTTCGAGC 1898573 Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 || || || | ||| | ||||| || || || || || || || || ||| | Sbjct 1898574 GAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCATGATGGAAAACATT 1898633 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATC-CTGGATCCCGTCGAGCGTAA 42604 ||||| || ||| | || || | || |||||| ||| || | | ||||| Sbjct 1898634 CACTCGGAAACATACTCTCTCCTCATCGATACCTACATCTCTGACTCTCAGC-AGCGTGG 1898692 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 | || ||||| | || ||||| || || ||| ||||| ||||| | || ||||| || Sbjct 1898693 CCTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAGACCGAGTGGGCCCT 1898752 Query 42665 CAACTGGATCGA-GAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 || |||||| || || ||| | ||||| | | |||| ||||||| || | || Sbjct 1898753 CAGGTGGATCTCTGA---CCAACGGTCGACGTTTGCCACGAGGTTGGTAGCGTTCGCGGC 1898809 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGG 42780 || || || ||||||||||| || | || || || ||||||||||| ||| | ||| Sbjct 1898810 GGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTGAAGAAACGAGG 1898869 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | || ||||| || | ||||| || |||||||| || || ||||||| ||| |||||| Sbjct 1898870 TCTC-ATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAAGGGATGCATA 1898928 Query 42841 GGGACTTTGCCTGCCTCCTGTTC 42863 || |||||||| ||| ||||| Sbjct 1898929 CAGATTTTGCCTGTCTCTTGTTC 1898951 >seq5 Length=2324656 Score = 89.7 bits (98), Expect = 1e-12 Identities = 201/295 (68%), Gaps = 8/295 (3%) Strand=Plus/Minus Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACG--GGGCTGCCCTCGTAGGTCGGGT 244355 ||||| | |||||| |||| || || | | |||| |||||||| ||||| || || Sbjct 535905 CCCCAAAGGTCAAATTGCAACAAGCCTTCG--GACGCAGGGCTGCCAGAGTAGGACGAGT 535848 Query 244356 AGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTC 244414 | || || || || |||| || ||| || | || | ||||| | ||| || ||| Sbjct 535847 ACGGGCCATCTTTCTCAGCCATCTCGACA-CTAGCTTCCACAGCGGCATGGTATATTGTC 535789 Query 244415 TCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATC 244474 ||||||||| || |||| | ||| |||| | | || || |||| || ||| Sbjct 535788 TCGAAGATCTGCTGATTCAGCTTGCGCGCCTGCTCTGATTCAAAAGGCATGCGCAAGATC 535729 Query 244475 ATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGG-A 244533 ||||| || || || ||||||||||||| || || || | ||| ||| |||||| | Sbjct 535728 ATGAAAGTATCCGCAAGACCCTGCACGCCGAGACCAATAGGGCGGTGACGCATGTTGGAA 535669 Query 244534 GCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588 | || | || || |||||||| ||||| ||||||| | ||| |||||| Sbjct 535668 TTACGTGAC-TCAGGAACGGGGTAGTAGTTGACGTCGATGATACGGTTCAGGTTG 535615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339034740640