Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6 136 9e-27 seq1 129 1e-24 seq9 91.5 3e-13 >seq6 Length=2129081 Score = 136 bits (150), Expect = 9e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 288266 CGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTA 288325 ||||||||| || || || |||||||| ||||| | || |||||||| || || | Sbjct 300437 CGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGA 300378 Query 288326 ATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGA 288385 ||| || || ||||| || || ||||| || | ||||| || || || ||||| | Sbjct 300377 GTTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAA 300318 Query 288386 TTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCC 288445 | || || |||||||| || || | || ||| || || ||||||||||||||||| | Sbjct 300317 TCTTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGC 300258 Query 288446 CGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| ||||||||||| |||||||| Sbjct 300257 CAGTCAGGGTCTTGACGAAGATCTGCAT 300230 Score = 132 bits (146), Expect = 1e-25 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 288266 CGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTA 288325 ||||||||| || || || ||||| |||||||| | || ||||| ||||| || | Sbjct 299642 CGAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGA 299583 Query 288326 ATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGA 288385 || || || |||||||||| |||||| || |||||||| || || ||||| | Sbjct 299582 GCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAA 299523 Query 288386 TTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCC 288445 | ||||| |||||||| || || | || || || || ||||| ||||||||||||| Sbjct 299522 TCTTCGCCTTCACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCC 299463 Query 288446 CGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||| ||||| |||||||| Sbjct 299462 CAGTGAGGGTCTTCACGAAGATCTGCAT 299435 Score = 129 bits (142), Expect = 1e-24 Identities = 171/235 (73%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | ||| |||||||| | ||| || || || || ||||||| Sbjct 300232 CATG-CCTCCACGTAGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGAATGTTATAGT 300174 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||| |||||||| | || || || |||||||||| ||||| || | Sbjct 300173 CGGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGG---T 300117 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || || || ||||| || || ||||| |||||||| || || | || | Sbjct 300116 CCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAG 300057 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||| |||||||| || || || ||||||||||| || ||||| Sbjct 300056 ACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 300002 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || |||||||| | || ||||| ||||| || | || || || |||||| Sbjct 299910 TCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 299851 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||| || | ||||| || || || |||||||| || || || ||||| Sbjct 299850 ATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTA 299791 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||||||||||||||| || |||| ||||| ||| Sbjct 299790 TCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTCTTCACG 299731 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 299730 AAGATCTGCAT 299720 >seq1 Length=3320137 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || ||||| || |||| ||| || || || || || || || ||||| |||||| Sbjct 2298587 TCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCGAAG 2298528 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| || || || || || ||||| || ||||| || ||||| |||||||| Sbjct 2298527 ATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTG 2298468 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || || || || ||||| |||||||||||||| |||| |||||| ||| Sbjct 2298467 TCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGTCTTTACG 2298408 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 2298407 AAAATCTGCAT 2298397 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || |||| |||||||| || || || | ||||| || |||||| Sbjct 2298305 TCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAAG 2298246 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || ||||| || || || ||||| || ||||| || || || Sbjct 2298245 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTG 2298186 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || || || ||||| || ||||| ||||| || |||| ||||||||| Sbjct 2298185 TCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTTGACG 2298126 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 2298125 AAGATCTGCAT 2298115 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || || || |||| ||| || || ||||| || ||||||| Sbjct 2298908 CCGCCGCGAAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2298849 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || || || || || ||||||||| |||| Sbjct 2298848 AGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGG 2298789 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| |||||||| || || || || | ||| ||| || || Sbjct 2298788 ATGCCCTCCTTATCCTGGATCTTCGCTTTGACATTATCGATTGTGTCGGACGACTCGACC 2298729 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || ||||| || || || || |||||||| Sbjct 2298728 TCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 2298682 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 288268 AGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAAT 288327 ||||| | ||||| ||||| || || || || || | || ||||| ||||| || ||| Sbjct 2299115 AGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAAT 2299056 Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || || || ||||| || || || ||||| ||||| || || || || Sbjct 2299055 TGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATC 2298996 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 ||||| ||||| || || || | || || ||||| || | |||||| ||||| || Sbjct 2298995 TTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGCCT 2298936 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||| |||||||| Sbjct 2298935 GTGAGGGTCTTGACGAAGATCTGCAT 2298910 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 || || |||||||| || || || || || || || || | |||| || || || || Sbjct 2297938 CCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATGGTATCGGAAGACTCAACCTCA 2297879 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTAT 288481 |||||||| ||||| ||||| |||||||||||||| |||||||| ||| ||| Sbjct 2297878 AGCGTGATAGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCATGATGATAT 2297827 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || |||||||| || ||||| ||||| || || | || || || || || Sbjct 675793 CCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCA 675852 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || |||||||||||||| || || ||||||||||| ||||||||| Sbjct 675853 AGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATT 675897 >seq9 Length=1678725 Score = 91.5 bits (100), Expect = 3e-13 Identities = 192/279 (69%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 326078 TCGGTCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCG 326137 || ||||| ||||||| || ||||| || | || ||| | ||| |||| | Sbjct 1435753 TCCGTCATAATCATCAACTGGCCGTACCGCAAACTCGAGATGTTCGTATACTCTTTGTTG 1435812 Query 326138 GTTTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGC 326196 | || ||||| | ||| | |||| | ||| |||||||||||||||| |||| || | Sbjct 1435813 CTCTGGAGGCCCATAATCTTCTTGATGTTCTG-GATTTCTTCGTTCTTCATGAT-CTGGT 1435870 Query 326197 CACGGAT-GCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCT 326255 || | | || ||||| ||||| | | ||| || ||||| ||||| |||||| | | | Sbjct 1435871 CATGCCTAGCTTCGCGCACGTTGAGCATTTTACCGCGAAGTGGGAAGACTCCAAAGTTAT 1435930 Query 326256 CGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCA 326315 |||| ||||| || || || || | ||||| | | || ||||| || || || | Sbjct 1435931 CGCGCCCGACGACACCCAATCCCGCAACAGCAAGGGCCTTGGCAGAATCTCCTTCAGTGA 1435990 Query 326316 GAATGAGAGTGCACATTTTGCTG--TTATTCGTTCCAGC 326352 |||| ||||| |||||| | || || |||| ||||| Sbjct 1435991 GAATAAGAGT--ACATTTAGATGCATTCCTCGTCCCAGC 1436027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654188399492