Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 9e-14 seq9 87.8 4e-12 >seq3 Length=3024150 Score = 93.3 bits (102), Expect = 9e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 243560 GGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCA 243619 |||| ||||||||||| | | |||||| | ||||||||||| || || || ||||| Sbjct 1896455 GGCTGATTGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTTGCAGACCGTC 1896396 Query 243620 TTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGG 243679 | |||| || || ||| || || |||||| | | |||||||| | |||||||| Sbjct 1896395 TGCTCATTGCCCTCGGTGGCGAAAAGCACTACAACGCGACAAACCCCTTCGACTTTATGG 1896336 Query 243680 AGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | | || || | || ||||| || |||||||| || ||||| || Sbjct 1896335 ACATGATCTCTTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGT 1896290 >seq9 Length=1678725 Score = 87.8 bits (96), Expect = 4e-12 Identities = 191/279 (68%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 298199 TCGGTCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCG 298258 || ||||| ||||||| || ||||| || | || ||| | ||| |||| | Sbjct 1435753 TCCGTCATAATCATCAACTGGCCGTACCGCAAACTCGAGATGTTCGTATACTCTTTGTTG 1435812 Query 298259 GTTTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGC 298317 | || ||||| | ||| | |||| | ||| |||||||||||||||| |||| || | Sbjct 1435813 CTCTGGAGGCCCATAATCTTCTTGATGTTCTG-GATTTCTTCGTTCTTCATGAT-CTGGT 1435870 Query 298318 CACGGAT-GCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCT 298376 || | | || ||||| || || | | ||| || ||||| ||||| |||||| | | | Sbjct 1435871 CATGCCTAGCTTCGCGCACGTTGAGCATTTTACCGCGAAGTGGGAAGACTCCAAAGTTAT 1435930 Query 298377 CGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCA 298436 |||| ||||| || || || || | ||||| | | || ||||| || || || | Sbjct 1435931 CGCGCCCGACGACACCCAATCCCGCAACAGCAAGGGCCTTGGCAGAATCTCCTTCAGTGA 1435990 Query 298437 GAATGAGAGTGCACATTTTGCTG--TTATTCGTTCCAGC 298473 |||| ||||| |||||| | || || |||| ||||| Sbjct 1435991 GAATAAGAGT--ACATTTAGATGCATTCCTCGTCCCAGC 1436027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879802170900