Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 seq6 113 4e-20 >seq1 Length=3320137 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAAT 45194 || |||| || || || || || ||||| |||||| || ||| ||| ||||| Sbjct 2298602 AGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAAC 2298543 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || ||||| ||| | ||||| ||||||||||| || ||||| ||||| || || ||||| Sbjct 2298542 TGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATC 2298483 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || || | || | || | ||||| ||||||||||| |||||||| | ||| || || Sbjct 2298482 TTCGCCTTCA-CGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCC 2298424 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||| ||||| ||||| ||||| Sbjct 2298423 CGTCAAAGTCTTTACGAAAATCTGCAT 2298397 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | |||| ||||||||||||||||| |||||||| || Sbjct 2299064 TCCTCCAATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTG 2299005 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| || || | || | ||||| |||||||| || || | || | Sbjct 2299004 TCTTGAATCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATT 2298945 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || || || || || || ||||| Sbjct 2298944 GTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 2298910 >seq6 Length=2129081 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | || ||||||| || || ||||| || || ||||| ||| Sbjct 300231 ATGCCTCCACGTAGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGAATGTTATAGTCG 300172 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || || | || || || ||| | ||||| || ||||||||||| Sbjct 300171 GAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGG 300112 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || ||||||||||| || || | || | || | ||||| |||||||| Sbjct 300111 GGAATGCCCTCCTTATCTTGAATCTTCGCCTTCA-CGTTATCGATCGTGTCAGAAGACTC 300053 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| |||| ||| ||||| || || || || || ||||||||||| Sbjct 300052 GACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 300002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003120899440