Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 129 7e-25 >seq3 Length=3024150 Score = 129 bits (142), Expect = 7e-25 Identities = 338/506 (67%), Gaps = 15/506 (3%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 ||||||||||| |||||||||||| |||||| || || |||||||| || |||||| Sbjct 1896640 CCCTCGTCACGACTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGGCCACGCTTC 1896699 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 ||||||||||| || | || || || |||||||| || ||||||||| ||||| Sbjct 1896700 TTCAACCAGAAGATTGAGGCGAAAGAACCGGAGAAGAAAATGCCCTCCACAGCGGCGAAG 1896759 Query 127658 GCAAATAGACGCTCGGCAAA---GGAGCGGGAC-TTTGTATCAAACCACTTCATCGCCCA 127713 || | || ||||| ||||| ||||| ||| | | | | ||| | ||||| Sbjct 1896760 GCGACTAATCGCTCAGCAAATGTGGAGC--GACGATCGGA--GATCCAGCGTAGTGCCCA 1896815 Query 127714 CTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTTTT 127772 | ||||| | | || ||| || | ||||| | || || || || | || | || Sbjct 1896816 GTCCGCCTTCCTTTTGACACAGGGAATGGTCTCAACAGCATCGAAAAGGTACTCGCGTTG 1896875 Query 127773 CTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCATTT 127832 || | || || |||||||| |||| || || || || || |||| ||||| ||| Sbjct 1896876 CTTA-GGGTCCTTGATGTAAGTATCGATAAGAAGGGAGTAGGTCTCGCTGTGGATATTTT 1896934 Query 127833 -CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCA 127891 ||| || || || ||||||| | ||||| || ||| ||||| | | Sbjct 1896935 CCATCAT-AATTTGGAACCCGTAGAAGCAACGCGCCTCAGCCGCCTGAACCTCGTTCGAG 1896993 Query 127892 AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATA 127951 || | | | ||||| || || ||||| || | ||||||||||| |||| | Sbjct 1896994 AAGCGCTCAACAAGGTTCTCGTTGACGATGCCATCAGAGGCGGCAAAAAACGCGAGGACA 1897053 Query 127952 TACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCGAGATCCTTT 128008 | | | || | | ||||| ||||| | || | |||||||||| |||||| ||| Sbjct 1897054 TGCGAGACAAAGTGACGCTCATTGTCGTTAAGGCGGTTATTCCAGTCGTGGAGATCTTTT 1897113 Query 128009 GAGAGATCTACCTCCTCCGCAGTCCA 128034 || || || | ||| || |||||||| Sbjct 1897114 GACAGGTCCATCTCTTCGGCAGTCCA 1897139 Score = 91.5 bits (100), Expect = 2e-13 Identities = 344/525 (66%), Gaps = 15/525 (3%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| ||| || | || ||||| || || ||||| || || ||| | ||| Sbjct 1898938 GCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAACCA 1898879 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| || ||||||| |||||| || | | ||| || || |||||||||||| Sbjct 1898878 GGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAGATC 1898819 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAA 127698 || || || ||||||||| | | | | |||||| | || || || | | Sbjct 1898818 CCTTCTACCGCCGCGAACGCTACCAACCTCGTGGCAAACG-TCGACCGTTGGTCAGAGAT 1898760 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758 |||| | | ||||||| | ||| | || || ||||| | |||| ||||| | || Sbjct 1898759 CCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATTGAA 1898700 Query 127759 GA-GTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 127817 || | | | | |||| | || |||||| |||| ||||| || ||||||| Sbjct 1898699 GAGGAGGCCACGCTGCTGA-GAGTCAGAGATGTAGGTATCGATGAGGAGAGAGTATGTTT 1898641 Query 127818 CGCCGTGGACCATTT-CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTC-GCTTAT 127875 | ||| | ||| ||| || | ||| | | || ||| |||| |||| || | Sbjct 1898640 CCGAGTGAATGTTTTCCATCAT-GATTTGAAATCCATAAAAACAGCGGACTTCAGCGGCT 1898582 Query 127876 CTGTACCTC-ATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCA 127933 ||||| || ||| |||| | | | |||||| ||||| || ||||| | Sbjct 1898581 -TGTACTTCGCTCG--AAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCG 1898525 Query 127934 GCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGT---CTTC 127990 |||||||| ||||||| ||| |||||| | |||| || || |||||| | ||| Sbjct 1898524 GCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTGTCATTCAGGTTATCGTTC 1898465 Query 127991 CAGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCAA 128035 |||||| || ||| || || | ||| | ||| || | |||||| Sbjct 1898464 CAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAA 1898420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507092636240