Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq3 129 7e-25
>seq3
Length=3024150
Score = 129 bits (142), Expect = 7e-25
Identities = 338/506 (67%), Gaps = 15/506 (3%)
Strand=Plus/Plus
Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597
||||||||||| |||||||||||| |||||| || || |||||||| || ||||||
Sbjct 1896640 CCCTCGTCACGACTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGGCCACGCTTC 1896699
Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657
||||||||||| || | || || || |||||||| || ||||||||| |||||
Sbjct 1896700 TTCAACCAGAAGATTGAGGCGAAAGAACCGGAGAAGAAAATGCCCTCCACAGCGGCGAAG 1896759
Query 127658 GCAAATAGACGCTCGGCAAA---GGAGCGGGAC-TTTGTATCAAACCACTTCATCGCCCA 127713
|| | || ||||| ||||| ||||| ||| | | | | ||| | |||||
Sbjct 1896760 GCGACTAATCGCTCAGCAAATGTGGAGC--GACGATCGGA--GATCCAGCGTAGTGCCCA 1896815
Query 127714 CTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTTTT 127772
| ||||| | | || ||| || | ||||| | || || || || | || | ||
Sbjct 1896816 GTCCGCCTTCCTTTTGACACAGGGAATGGTCTCAACAGCATCGAAAAGGTACTCGCGTTG 1896875
Query 127773 CTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCATTT 127832
|| | || || |||||||| |||| || || || || || |||| ||||| |||
Sbjct 1896876 CTTA-GGGTCCTTGATGTAAGTATCGATAAGAAGGGAGTAGGTCTCGCTGTGGATATTTT 1896934
Query 127833 -CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCA 127891
||| || || || ||||||| | ||||| || ||| ||||| | |
Sbjct 1896935 CCATCAT-AATTTGGAACCCGTAGAAGCAACGCGCCTCAGCCGCCTGAACCTCGTTCGAG 1896993
Query 127892 AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATA 127951
|| | | | ||||| || || ||||| || | ||||||||||| |||| |
Sbjct 1896994 AAGCGCTCAACAAGGTTCTCGTTGACGATGCCATCAGAGGCGGCAAAAAACGCGAGGACA 1897053
Query 127952 TACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCGAGATCCTTT 128008
| | | || | | ||||| ||||| | || | |||||||||| |||||| |||
Sbjct 1897054 TGCGAGACAAAGTGACGCTCATTGTCGTTAAGGCGGTTATTCCAGTCGTGGAGATCTTTT 1897113
Query 128009 GAGAGATCTACCTCCTCCGCAGTCCA 128034
|| || || | ||| || ||||||||
Sbjct 1897114 GACAGGTCCATCTCTTCGGCAGTCCA 1897139
Score = 91.5 bits (100), Expect = 2e-13
Identities = 344/525 (66%), Gaps = 15/525 (3%)
Strand=Plus/Minus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| ||| || | || ||||| || || ||||| || || ||| | |||
Sbjct 1898938 GCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAACCA 1898879
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
||||||||||| || ||||||| |||||| || | | ||| || || ||||||||||||
Sbjct 1898878 GGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAGATC 1898819
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAA 127698
|| || || ||||||||| | | | | |||||| | || || || | |
Sbjct 1898818 CCTTCTACCGCCGCGAACGCTACCAACCTCGTGGCAAACG-TCGACCGTTGGTCAGAGAT 1898760
Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758
|||| | | ||||||| | ||| | || || ||||| | |||| ||||| | ||
Sbjct 1898759 CCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATTGAA 1898700
Query 127759 GA-GTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 127817
|| | | | | |||| | || |||||| |||| ||||| || |||||||
Sbjct 1898699 GAGGAGGCCACGCTGCTGA-GAGTCAGAGATGTAGGTATCGATGAGGAGAGAGTATGTTT 1898641
Query 127818 CGCCGTGGACCATTT-CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTC-GCTTAT 127875
| ||| | ||| ||| || | ||| | | || ||| |||| |||| || |
Sbjct 1898640 CCGAGTGAATGTTTTCCATCAT-GATTTGAAATCCATAAAAACAGCGGACTTCAGCGGCT 1898582
Query 127876 CTGTACCTC-ATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCA 127933
||||| || ||| |||| | | | |||||| ||||| || ||||| |
Sbjct 1898581 -TGTACTTCGCTCG--AAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCG 1898525
Query 127934 GCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGT---CTTC 127990
|||||||| ||||||| ||| |||||| | |||| || || |||||| | |||
Sbjct 1898524 GCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTGTCATTCAGGTTATCGTTC 1898465
Query 127991 CAGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCAA 128035
|||||| || ||| || || | ||| | ||| || | ||||||
Sbjct 1898464 CAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAA 1898420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613507092636240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |