Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq6 145 9e-30
seq1 131 2e-25
seq8 82.4 9e-11
>seq6
Length=2129081
Score = 145 bits (160), Expect = 9e-30
Identities = 151/198 (76%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456
|| |||||||| |||||||||||||| || || ||||| |||| ||||||||||||||
Sbjct 300702 GTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCC 300643
Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516
||||| || | |||||||||||||| || | | ||||||||| |||||| ||||
Sbjct 300642 GCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTG 300583
Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576
| | | | |||||| || || || |||| |||||| || || ||||| || ||
Sbjct 300582 ACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTACCCGTGAGGGTC 300523
Query 46577 TTAACAAAGATTTGCATT 46594
|| |||||||| ||||||
Sbjct 300522 TTGACAAAGATCTGCATT 300505
Score = 143 bits (158), Expect = 3e-29
Identities = 169/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
||||||| | || ||| | || |||||||| || |||||| || || || |||||||
Sbjct 300230 TGCCTCCACGTAGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGAATGTTATAGTCGG 300171
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| |||||||| |||| |||||||||||||| ||||| ||||||||||||||||| | |
Sbjct 300170 AAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGG 300111
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | || |||||| || |||||| ||| | | | | |||||| || || |
Sbjct 300110 GAATGCCCTCCTTATCTTGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGA 300051
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || | ||| || || |||||||| || || || || || ||||||||
Sbjct 300050 CCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 300002
Score = 134 bits (148), Expect = 2e-26
Identities = 145/192 (76%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || || ||||| || || ||||| |||| |||||||||||||| |||||
Sbjct 299911 CTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 299852
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||||||||||||||| | || | || |||||||||| |||||| ||||| |
Sbjct 299851 GATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 299792
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| || ||||| || | |||||| || || || |||| ||| || ||
Sbjct 299791 ATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTCTTCAC 299732
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 299731 GAAGATCTGCAT 299720
Score = 134 bits (148), Expect = 2e-26
Identities = 147/193 (76%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| |||||||||||||| || |||||||| | || ||||| |||||||| |||||
Sbjct 300421 CTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCAGCGAA 300362
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||||||| | ||| | | |||||||||| ||||| ||| | |||
Sbjct 300361 AATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCA-CGT 300303
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| ||| || || || | |||||| || ||||| ||||| || || |
Sbjct 300302 TGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTGA 300243
Query 46581 CAAAGATTTGCAT 46593
| ||||| |||||
Sbjct 300242 CGAAGATCTGCAT 300230
Score = 116 bits (128), Expect = 4e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| || ||||| || || ||||| |||| |||||||||||||| |||||
Sbjct 299626 CTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 299567
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| ||||||||||||| || | | |||||||||| |||||| ||| | |
Sbjct 299566 GATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATCTTCGCCTTCACGTT 299507
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| || ||||| || | ||||| || || || || || || || ||
Sbjct 299506 ATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCAGTGAGGGTCTTCAC 299447
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 299446 GAAGATCTGCAT 299435
>seq1
Length=3320137
Score = 131 bits (144), Expect = 2e-25
Identities = 144/192 (75%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || || || | || |||||||||||||| || ||
Sbjct 2298873 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAA 2298814
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||| || || | || | || |||||| ||| ||||||| |||| |
Sbjct 2298813 AATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTGACATT 2298754
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| ||| || || |||| |||||||| ||||| ||||| ||||| ||
Sbjct 2298753 ATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCAC 2298694
Query 46582 AAAGATTTGCAT 46593
|||||| |||||
Sbjct 2298693 AAAGATCTGCAT 2298682
Score = 122 bits (134), Expect = 1e-22
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||||||||| ||||| || |||||| | || || ||||| || || |||||
Sbjct 2298306 CTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAA 2298247
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||||| || | | |||||||||| |||||| ||||| |
Sbjct 2298246 GATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATT 2298187
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| || ||||| || | |||||||| |||||||||| || || ||
Sbjct 2298186 GTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTTGAC 2298127
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 2298126 GAAGATCTGCAT 2298115
>seq8
Length=1850677
Score = 82.4 bits (90), Expect = 9e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||||||||| || || ||| || ||||| |||| ||||||||||| ||||| ||
Sbjct 435869 CTCCTTTTGGATGTTATAATCGCTGAGGGTGCGACCGTCTTCGAGCTGCTTTCCGGCAAA 435928
Query 46462 TATCAAGCGCTGCTGGTCGG 46481
|||| ||||||||||||||
Sbjct 435929 AATCAGGCGCTGCTGGTCGG 435948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238301083280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |