Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq3 221 1e-52
seq1 122 9e-23
seq6 109 5e-19
>seq3
Length=3024150
Score = 221 bits (244), Expect = 1e-52
Identities = 387/561 (69%), Gaps = 7/561 (1%)
Strand=Plus/Minus
Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943
|||||| | || ||||| || ||||| || ||||||| ||| ||||||||
Sbjct 1898952 TGAACAAGAGACAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAGTTCGTTAG 1898893
Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003
|| || || || |||||||| || ||||| || ||||| || || | || ||| |
Sbjct 1898892 AAAAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATC 1898833
Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063
| || ||||||| || || || |||||||| || |||| | | | | ||||| |
Sbjct 1898832 CGGAGAAGAAGATCCCTTCTACCGCCGCGAACGCTACCAACCTCGTGGCAAACGTCGACC 1898773
Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123
|| | | |||||| | || ||||| |||| ||| | |||||||| || || || |
Sbjct 1898772 GTTGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCT 1898713
Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGG 133183
|||| | || || | || || | ||| | | |||||| |||||||||
Sbjct 1898712 CGATCGAATTGAAGAGGAGGCCACGCTGCTGAGAGTCAGAGATGTAGGTATCGATGAGGA 1898653
Query 133184 TCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCG 133243
|| || |||||||||| | ||| ||||| ||||||||| || ||||| || ||
Sbjct 1898652 GAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGGA 1898593
Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAA--CGCTCGACCAGATTTTCGTTGACGATGCC 133301
| || | | || ||||| | ||||| ||||| |||||||| |||||||| || ||
Sbjct 1898592 CTTCAGCGGCTTGTACTTC--GCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACC 1898535
Query 133302 GTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA 133361
|||| ||||| ||||| ||||| || | ||||||||||| |||||||| ||||
Sbjct 1898534 GTCGGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTGTCATTCAG 1898475
Query 133362 GCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGA 133418
| || ||||||| | || ||||||| || | ||| ||| |||||||||||
Sbjct 1898474 GTTATCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGA 1898415
Query 133419 CGCCTCGGCTTTTTTGTACAT 133439
|||| |||||| ||||||||
Sbjct 1898414 AGCCTGGGCTTTCTTGTACAT 1898394
Score = 219 bits (242), Expect = 4e-52
Identities = 389/562 (69%), Gaps = 9/562 (2%)
Strand=Plus/Plus
Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943
|||||| |||||| || |||||| ||||| |||||||| | |||||||| |||
Sbjct 1896608 TGAACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGG 1896667
Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003
||| || | || ||||||||||| || || || | ||| || || | ||||||| |
Sbjct 1896668 AGAAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAAC 1896727
Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063
| || ||||| | |||||| || || ||||| || || | ||||| | || ||||
Sbjct 1896728 CGGAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAG- 1896786
Query 133064 CTTTGCT-GGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTT 133122
| | | || ||||||||| || ||||| || ||||| |||||| || || || ||
Sbjct 1896787 CGACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTC 1896846
Query 133123 TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGA 133180
|| | || | || || | | | | | | ||| | | ||| || ||||| |
Sbjct 1896847 TCAACAGCATCGAA--AAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAA 1896904
Query 133181 GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACC 133240
| || || | || ||| | || ||||| ||||| || ||||| ||||| |
Sbjct 1896905 GAAGGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAAC 1896964
Query 133241 GCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGC 133300
||||||| || |||| || || | | ||| ||||| || || || |||||||||||||
Sbjct 1896965 GCGCCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGC 1897024
Query 133301 CGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA 133360
| || |||||| ||||| || || || ||| || || || ||||| |||||||| |
Sbjct 1897025 CATCAGAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAA 1897084
Query 133361 AGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACG 133417
||| | ||||||| | || || |||||||||| ||| ||| | ||||| || |
Sbjct 1897085 GGCGGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAG 1897144
Query 133418 ACGCCTCGGCTTTTTTGTACAT 133439
|||| || ||||||||||||||
Sbjct 1897145 ACGCTTCAGCTTTTTTGTACAT 1897166
>seq1
Length=3320137
Score = 122 bits (134), Expect = 9e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| || || ||||| ||||||||| | || |||||| | ||
Sbjct 2298682 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2298741
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | |||| || |||| || || ||||| || || | || |||
Sbjct 2298742 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2298801
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || |||| |||||||| ||||| || || | || ||||| ||||||||||
Sbjct 2298802 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2298861
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| ||||| ||||||| || | || || ||| | | |||||
Sbjct 2298862 ATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTTCGCGGCGG 2298908
>seq6
Length=2129081
Score = 109 bits (120), Expect = 5e-19
Identities = 156/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||||||||| || || || |||| |||||| | |
Sbjct 300002 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 300061
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || | || || | || || ||||| |||||| | |||||
Sbjct 300062 GACACGATCGATAACG-TGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCA 300120
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||||||||| ||||| || |||| ||||| || |||||| ||
Sbjct 300121 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACTATAA 300180
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||| || ||||| | || ||||| | || || |||
Sbjct 300181 CATTCAGAAGGAGTCCACCTTGCATCTCGTCCTTCGT 300217
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172712469760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |