Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq3 105 8e-18
seq5 87.8 2e-12
>seq3
Length=3024150
Score = 105 bits (116), Expect = 8e-18
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233
|||||||||||| | |||| || || ||| ||||| || |||||||| ||||| |||
Sbjct 1896779 TTTGCTGAGCGATTAGTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTC 1896720
Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293
| | || | ||| | |||||||| || |||||||| || ||| ||||||||| ||
Sbjct 1896719 GCCTCAATCTTCTGGTTGAAGAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAA 1896660
Query 102294 CTTATCTCTCGTGACGAGGGA 102314
|| ||| |||||||||||||
Sbjct 1896659 CTCATCAGTCGTGACGAGGGA 1896639
>seq5
Length=2324656
Score = 87.8 bits (96), Expect = 2e-12
Identities = 160/229 (70%), Gaps = 13/229 (6%)
Strand=Plus/Plus
Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962
||||| ||||| | || |||||||| |||| ||||| |||| | ||| || ||
Sbjct 534505 GGTACCAATGGATATTCTAATGGTATTGTTCCCATGCTCCGCGCGTACGACGAGACTGCT 534564
Query 111963 CGCTATGTAAACCAAGCTGGGCGTCGCAA------GGGATCTATCGCAGTCTATCTTGAG 112016
|||||||| | |||| || | ||| ||| || ||||| ||||| |||||
Sbjct 534565 CGCTATGTCGATCAAGGCGG---TAACAAACTCCCGGGCGCTTTCGCAATCTATATTGAG 534621
Query 112017 CCATGGCACGCGGATATCAT-GGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGA 112075
|||||||| || |||| ||| |||||| | || | ||| ||||| || | |||||
Sbjct 534622 CCATGGCATGCCGATA-CATATGAGTTCGTCGACCTCCGTAAAAACCACGGCAAGGAGGA 534680
Query 112076 GGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 112123
| | |||| ||||| ||||||| || || ||||| || ||||| ||
Sbjct 534681 AGTTC-GTGCACGCGACCTCTTCTATGCACTTTGGATCCCCGATCTTTT 534728
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620742291370080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |