Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3 105 8e-18 seq5 87.8 2e-12 >seq3 Length=3024150 Score = 105 bits (116), Expect = 8e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 |||||||||||| | |||| || || ||| ||||| || |||||||| ||||| ||| Sbjct 1896779 TTTGCTGAGCGATTAGTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTC 1896720 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 | | || | ||| | |||||||| || |||||||| || ||| ||||||||| || Sbjct 1896719 GCCTCAATCTTCTGGTTGAAGAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAA 1896660 Query 102294 CTTATCTCTCGTGACGAGGGA 102314 || ||| ||||||||||||| Sbjct 1896659 CTCATCAGTCGTGACGAGGGA 1896639 >seq5 Length=2324656 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 13/229 (6%) Strand=Plus/Plus Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 ||||| ||||| | || |||||||| |||| ||||| |||| | ||| || || Sbjct 534505 GGTACCAATGGATATTCTAATGGTATTGTTCCCATGCTCCGCGCGTACGACGAGACTGCT 534564 Query 111963 CGCTATGTAAACCAAGCTGGGCGTCGCAA------GGGATCTATCGCAGTCTATCTTGAG 112016 |||||||| | |||| || | ||| ||| || ||||| ||||| ||||| Sbjct 534565 CGCTATGTCGATCAAGGCGG---TAACAAACTCCCGGGCGCTTTCGCAATCTATATTGAG 534621 Query 112017 CCATGGCACGCGGATATCAT-GGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGA 112075 |||||||| || |||| ||| |||||| | || | ||| ||||| || | ||||| Sbjct 534622 CCATGGCATGCCGATA-CATATGAGTTCGTCGACCTCCGTAAAAACCACGGCAAGGAGGA 534680 Query 112076 GGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 112123 | | |||| ||||| ||||||| || || ||||| || ||||| || Sbjct 534681 AGTTC-GTGCACGCGACCTCTTCTATGCACTTTGGATCCCCGATCTTTT 534728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742291370080