Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq6 107 1e-18
seq1 105 4e-18
>seq6
Length=2129081
Score = 107 bits (118), Expect = 1e-18
Identities = 142/195 (73%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| |||||||||||||||||| | || | || || ||||| || || || ||
Sbjct 299625 TCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 299566
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | || |||||||| | || | ||||||||||| ||||||| || ||
Sbjct 299565 ATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATCTTCGCCTTCAC---- 299510
Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||||| | ||| | ||| || |||| ||| || || || || ||||| |||||
Sbjct 299509 GTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCAGTGAGGGTCTT 299450
Query 34967 CACAAAGATCTGCAT 34981
||| |||||||||||
Sbjct 299449 CACGAAGATCTGCAT 299435
Score = 102 bits (112), Expect = 5e-17
Identities = 154/214 (72%), Gaps = 9/214 (4%)
Strand=Plus/Minus
Query 34773 ACCAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
|||||| |||| ||||| || ||||| || || ||||| || ||| | || | || ||
Sbjct 300715 ACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTC 300656
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||| || || || || || || || |||||||| | || | ||| ||||||||
Sbjct 300655 GAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTG 300596
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGG 34947
||||||| ||||| || | ||||| | ||| | ||| || || | || || |
Sbjct 300595 AATCTTCGCCTTGAC--AT--TGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTG 300540
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || |||||||| ||||| ||||||||||||||
Sbjct 300539 TCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 300506
Score = 96.9 bits (106), Expect = 2e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||||||||| |||||| | || | || || ||||| || || || ||
Sbjct 299910 TCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 299851
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | || |||||||| | || | ||||||||||| ||||| ||||||
Sbjct 299850 ATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTA 299791
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| ||| | ||| || |||| || || || ||||| || | ||||||||
Sbjct 299790 TCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTCTTCACG 299731
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 299730 AAGATCTGCAT 299720
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| || || ||||||||||| | ||| |||| || || || || || || ||
Sbjct 300420 TCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCAGCGAAA 300361
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| |||| | ||||||||||| |||||| || |||
Sbjct 300360 ATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTTG 300301
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| ||| | ||| || |||| || || || || || || || ||||| ||
Sbjct 300300 TCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTGACG 300241
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 300240 AAGATCTGCAT 300230
Score = 89.7 bits (98), Expect = 3e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||||||||| ||||| | || | || || ||||| || || || ||
Sbjct 300192 TCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAG 300133
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | || |||||||| | || | |||||||| || ||||||| || |||
Sbjct 300132 ATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTCACGTTA 300073
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| ||| | ||| || |||| || || || || |||||||| ||||| ||
Sbjct 300072 TCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACG 300013
Query 34971 AAGATCTGCATA 34982
|| || ||||||
Sbjct 300012 AAAATTTGCATA 300001
>seq1
Length=3320137
Score = 105 bits (116), Expect = 4e-18
Identities = 147/202 (73%), Gaps = 8/202 (4%)
Strand=Plus/Minus
Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844
||||| |||||||||||||| || |||||||| | || | || |||| || || ||
Sbjct 2299106 GTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAATTGCTTGCCC 2299047
Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904
||||| || || ||||||||||| |||| | || |||||||| ||||||| ||
Sbjct 2299046 GCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTC 2298987
Query 34905 ACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960
|| || ||||||| | ||| | ||| || || | || || || || || |||||
Sbjct 2298986 AC--AT--TATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGCCTGTGAG 2298931
Query 34961 AGTCTTCACAAAGATCTGCATA 34982
||||| || ||||||||||||
Sbjct 2298930 GGTCTTGACGAAGATCTGCATA 2298909
Score = 95.1 bits (104), Expect = 8e-15
Identities = 141/196 (72%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| |||||| | || |||| || ||||| || || |||||
Sbjct 2298872 TCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAA 2298813
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || || || || | || | |||||||| || |||||| |||||| ||
Sbjct 2298812 ATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTGAC--AT 2298755
Query 34911 GCTATCGATTCAC-CGGCC---TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
|||||||| ||| | || || || | ||| ||||| || || || || || ||
Sbjct 2298754 --TATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTT 2298697
Query 34967 CACAAAGATCTGCATA 34982
||||||||||||||||
Sbjct 2298696 CACAAAGATCTGCATA 2298681
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
||||||||||| || || || || || |||| |||| |||| ||| ||||| || ||
Sbjct 2298587 TCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCGAAG 2298528
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | ||||||||||| | || | ||| |||||||| ||||||| || |||
Sbjct 2298527 ATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTG 2298468
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | ||| || |||| || || || || ||||| | |||||| ||
Sbjct 2298467 TCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGTCTTTACG 2298408
Query 34971 AAGATCTGCAT 34981
|| ||||||||
Sbjct 2298407 AAAATCTGCAT 2298397
Score = 84.2 bits (92), Expect = 1e-11
Identities = 138/195 (71%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| || || || || ||||| | || |||| || |||||||| || || ||
Sbjct 2298305 TCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAAG 2298246
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| | || | ||||||||||| ||||||| ||||| ||
Sbjct 2298245 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGAC--AT 2298188
Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||| | ||| | ||| || || | || ||||| || ||||| | |||||
Sbjct 2298187 --TGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTT 2298130
Query 34967 CACAAAGATCTGCAT 34981
|| |||||||||||
Sbjct 2298129 GACGAAGATCTGCAT 2298115
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633544609392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |