Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq3 190 2e-43
>seq3
Length=3024150
Score = 190 bits (210), Expect = 2e-43
Identities = 393/580 (68%), Gaps = 11/580 (2%)
Strand=Plus/Minus
Query 18942 AAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAA 19001
|||||| | |||| | ||| |||||||| ||| | || ||||| | ||| ||||
Sbjct 1898960 AAGATGACTGAACAAGAGACAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAG 1898901
Query 19002 TTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGC 19061
||| |||||||| |||||||||||||| || |||| ||| || | |||||| || |||||
Sbjct 1898900 TTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGC 1898841
Query 19062 AAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATA 19121
||| ||||| || ||||| || |||||||| || || || || || | || || |
Sbjct 1898840 AAAAGATCCGGAGAAGAAGATCCCTTCTACCGCCGCGAACGCTACCAACCTCGTGGCA-A 1898782
Query 19122 ACTAGCATCATTATTATGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATG 19180
|| | | || | || ||||| | || ||||| || | ||||| || || ||||
Sbjct 1898781 ACGTCGACCGTTGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATG 1898722
Query 19181 GCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCAT 19240
| || ||||| || ||||| || || ||||| | | || | || | ||
Sbjct 1898721 GTATAGTCTCGATCGAATTGAAGAGGAGGCCACGCTGCTGAGAGTCAGAGATGTAGGTAT 1898662
Query 19241 CTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAA 19300
| || | | | ||| |||| || ||||| ||||| || || |||||||| ||||
Sbjct 1898661 CGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAA 1898602
Query 19301 AACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAA 19360
|||| | |||| | |||||||| || |||| | || |||| ||| || || |
Sbjct 1898601 AACAGCGGACTTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGA 1898542
Query 19361 CTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATG------TTTTT 19414
| || || || ||| ||||||||||| | |||| | || ||||| || |
Sbjct 1898541 CAATACCGTCGGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTGT 1898482
Query 19415 CATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTG 19474
||| | |||||| | ||||| || |||||||| || | ||| | ||||| |
Sbjct 1898481 CAT-TCAGGTTATCG--TTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACG 1898425
Query 19475 TCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514
||||||| ||||||| ||||| || ||||| | ||| ||
Sbjct 1898424 TCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1898385
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108701630960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |