Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq1 221 2e-52
seq2 168 9e-37
seq6 158 2e-33
seq8 113 6e-20
seq7 107 3e-18
>seq1
Length=3320137
Score = 221 bits (244), Expect = 2e-52
Identities = 187/230 (81%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919
||||||| ||||||||||||||||| ||||| || || |||||| | ||||| |||||||
Sbjct 2298680 GTATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGT 2298739
Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979
| |||||||||||||| ||||||| ||||| || |||||||| ||||| ||||| ||||
Sbjct 2298740 CCGACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATC 2298799
Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039
| || || ||||||||||| || || ||||| || ||||| || ||||| | || ||||
Sbjct 2298800 AACAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACA 2298859
Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
|| | || |||||||| || || |||||||| || | ||||| || |||
Sbjct 2298860 ACATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTTCGCGGCGGT 2298909
Score = 163 bits (180), Expect = 4e-35
Identities = 161/208 (77%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || || | || || || || ||||| || || || ||||| ||
Sbjct 2298115 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2298174
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || |||| || |||||||| || ||||| || || || ||||| |||
Sbjct 2298175 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 2298234
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || ||||| || ||||||||||||||||| ||||| || || || | ||||||||
Sbjct 2298235 CAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCCGATTACAAT 2298294
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTG 172069
| || ||||||||||| || |||||||
Sbjct 2298295 ATCCAGAAGGAGTCTACCCTTCACCTTG 2298322
Score = 147 bits (162), Expect = 3e-30
Identities = 149/194 (77%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919
||||||| ||||| || || ||||| || || || || ||||| | ||||| ||||| |
Sbjct 2298908 GTATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACAATCACGTTGGAGGTAGAGTCTT 2298967
Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979
| ||||| |||||||| | || || ||||||||||| ||||||||||| || || || |
Sbjct 2298968 CGGACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACC 2299027
Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039
||||||| || |||||||| || || || | || || || || || || | |||||||
Sbjct 2299028 AGCAACGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACA 2299087
Query 172040 ACGTTCAAAAGGAG 172053
|| |||| || |||
Sbjct 2299088 ACATTCAGAAAGAG 2299101
Score = 134 bits (148), Expect = 2e-26
Identities = 334/500 (67%), Gaps = 9/500 (2%)
Strand=Plus/Minus
Query 198450 TTCAAGGATGTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTTGATTTT 198509
|||||||| || | || || ||| || ||||| ||| || |||| |||| | ||
Sbjct 2114101 TTCAAGGACGTCGCAGGCATGGACGAGGCCAAGGAGGAGATCATGGAGTTTGTCAAATTC 2114042
Query 198510 CTTAAAAACCCCGAAAAGTACTATGGAAG-TGGTGCCCGA-ATCCCACGTGGTGCTCTTC 198567
|| || ||||| |||||| | ||| ||| | | | ||||| || ||||| | |
Sbjct 2114041 CTCAAGGACCCCACCAAGTACGAA--AAGCTGGGGGCTAAGATCCCTCGCGGTGCCATCC 2113984
Query 198568 TCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGA 198627
|| |||| | || ||||| || || || | || ||| || | ||| || ||| |||
Sbjct 2113983 TCTCCGGACCTCCTGGTACAGGAAAGACGTTACTTGCTAAGGCCACCGCCGGCGAAGCGA 2113924
Query 198628 GTGTCCCCTTTCT-TCAGTGCTCCGCGGCGAGTTTCATCGAGATGTTCGTTGGTGTTGGT 198686
| ||||| || || || || ||||| | ||| ||||||||||||| |||||||||
Sbjct 2113923 GCGTCCCTTTCCTCTCCGT-CTCCGGTTCCGAATTCGTCGAGATGTTCGTCGGTGTTGGT 2113865
Query 198687 GCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCATGTATCATCTTC 198746
| ||| || || || || || | | || ||||| || || |||||||||
Sbjct 2113864 TCCTCGCGTGTACGCGACCTTTTCGCGTCCGCGAAGAAAAATGCCCCTTGCATCATCTTC 2113805
Query 198747 ATTGATGAGATTGACGCTGTTGGTAAGAAGCGTGG---TGGAACTACTACACCTGGTAAT 198803
|| || || |||||||| | |||||| || || ||| | | ||| ||
Sbjct 2113804 ATCGACGAAATTGACGCCATCGGTAAGTCACGCGGAAAGGGAGGCAACATGGGTGGGAAC 2113745
Query 198804 GATGAGCGTGAGCAGACGATTAACCAGCTTCTCACTGAGATGGATGGTTTTGACAATGAG 198863
|| ||||| ||| |||| | |||||||| || |||||||||||||||| || ||
Sbjct 2113744 GACGAGCGCGAGTCGACGCTCAACCAGCTCCTTGTCGAGATGGATGGTTTTGGCACGCAG 2113685
Query 198864 ACTGGTATCGTGGTGATTGCTGCTACAAATAGGATTGATATCCTAGATGATGCACTGCTT 198923
| |||| || | || | || |||||| |||| |||| || ||||| |
Sbjct 2113684 CAGCATGTCGTCGTACTGGCCGGCACCAATAGGCCTGATGTCCTCGACCCCGCACTCATG 2113625
Query 198924 CGTCCCGGTCGATTCGACCG 198943
|||||||| || ||||||||
Sbjct 2113624 CGTCCCGGCCGGTTCGACCG 2113605
Score = 98.7 bits (108), Expect = 1e-15
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || || || || ||||| || || || || |||||||| ||||| ||||| ||
Sbjct 675896 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCT 675837
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965
||||| ||||| ||| ||||||||||||| || || ||||||||
Sbjct 675836 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGG 675793
Score = 93.3 bits (102), Expect = 6e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || || || || || || |||||||| || ||||||||||| ||
Sbjct 2297835 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACTATCACGCTTGAGGTTGAGTCTTCC 2297894
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965
|| || ||||| || |||| ||||||||||| |||||||| ||
Sbjct 2297895 GATACCATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGG 2297938
>seq2
Length=2980060
Score = 168 bits (186), Expect = 9e-37
Identities = 251/356 (71%), Gaps = 0/356 (0%)
Strand=Plus/Plus
Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691
|| ||||| || || || ||||| | | |||||||||||||| || || |||| | |
Sbjct 1659408 CCGGAAGAGATCTCCTCGATGGTTCTCTTGAAGATGAAGGAGACCGCTGAGTCTTACCTC 1659467
Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751
|| | || || | | || || ||||| || ||||| ||||||| || || || ||
Sbjct 1659468 GGCACGACCGTCACGAACGCCGTCGTGACGGTCCCTGCGTACTTCAACGACTCGCAGCGT 1659527
Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811
||||| || |||||||| | | || | || | ||| ||| | |||||||| ||
Sbjct 1659528 CAGGCTACCAAGGACGCCGGAACCATCTCCGGAATGAACATCCTTCGTATTATCAACGAG 1659587
Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTA 195871
|| || || || || ||||| |||||||| |||||||| | || || || ||
Sbjct 1659588 CCCACCGCCGCCGCTATTGCGTATGGTCTCGACAAGAAGGTGATCGGCGAGCGCAACGTC 1659647
Query 195872 TTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGT 195931
| ||||| |||||||| || || || || ||||| || ||||| | || || | |||
Sbjct 1659648 CTCATCTTCGATCTCGGAGGAGGAACTTTCGATGTGTCTCTTCTTACCATCGAGGAGGGT 1659707
Query 195932 ATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987
|| ||||| || ||||| ||||| ||||| || || | |||||||| || |||||
Sbjct 1659708 ATCTTCGAGGTCAAGGCCACTGCCGGTGACACCCACTTGGGTGGTGAGGACTTCGA 1659763
Score = 107 bits (118), Expect = 3e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 195332 TGTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGT 195391
|| || ||||| ||||| || || ||||| ||||| ||| |||| || || || |||||
Sbjct 1658997 TGCGTGGGTGTGTGGCAGAACGACCGTGTCGAGATCATCGCGAACGATCAGGGTAACCGC 1659056
Query 195392 ACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAA 195451
|| ||||| ||||| || |||| | || || || |||||| | || |||||||||||
Sbjct 1659057 ACGACTCCCTCGTATGTCTCCTTCTCCGACAACGAGCGTCTCATCGGTGATGCCGCAAAG 1659116
Query 195452 AATCAGACAGCTATGAACCCTATCAATAC 195480
|| ||| || |||||||| ||||| ||
Sbjct 1659117 AACCAGGTGGCGATGAACCCCATCAACAC 1659145
Score = 104 bits (114), Expect = 3e-17
Identities = 187/271 (69%), Gaps = 8/271 (3%)
Strand=Plus/Minus
Query 195721 TGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGC 195780
||| ||||| ||||||| || || || || | ||||| |||||||| | || || ||
Sbjct 878603 TGTCCCTGCCTACTTCAACGACTCGCAGCGTCTCGCGACCAAGGACGCCGGCGCCATCGC 878544
Query 195781 GGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840
|| || || || | || ||||| || || || || || || || || || |||||
Sbjct 878543 TGGCCTCGACGTGCTCCGTATCATCAACGAGCCCACCGCCGCCGCCATCGCATACGGTCT 878484
Query 195841 GGACAAGAACAAGGACGAAGATAAA----AATGTATTGATCTTTGATCTCGGTGGTGGTA 195896
||| || ||| |||||| | || || | ||||| ||||||||||| || |
Sbjct 878483 CGACCAG--CAAT--CGAAGACCGAGCGCAACGTCCTCATCTTCGATCTCGGTGGAGGAA 878428
Query 195897 CGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTG 195956
| || |||||||| || ||||| || || ||| | |||| || ||||| || || |
Sbjct 878427 CTTTCGATGTCTCGCTCCTCAACATCAGCGGCGGTGTCTTCGCCGTCAAGGCCACCGCCG 878368
Query 195957 GTGATACTCATCTAGGTGGTGAAGATTTCGA 195987
| || || || | |||||||| || |||||
Sbjct 878367 GCGACACCCACTTGGGTGGTGAGGACTTCGA 878337
>seq6
Length=2129081
Score = 158 bits (174), Expect = 2e-33
Identities = 156/202 (77%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| |||||||||| || || || ||||| || || || || || || |||||||| ||||
Sbjct 299997 GTGGTATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGT 300056
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
| || ||||| ||||||||| | || || ||||||||||||||||| |||||||| || |
Sbjct 300057 CTTCTGACACGATCGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGG 300116
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036
| ||||| || | || || || || || ||||| ||||| || || || || | || |
Sbjct 300117 ACCAGCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACT 300176
Query 172037 ACAACGTTCAAAAGGAGTCTAC 172058
| ||| |||| |||||||| ||
Sbjct 300177 ATAACATTCAGAAGGAGTCCAC 300198
Score = 156 bits (172), Expect = 6e-33
Identities = 158/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| ||||| ||||| ||||| || || |||||||||||||| ||||| ||
Sbjct 299435 ATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTTCG 299494
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||||||| | || || |||||||| || ||||| || || || ||||| |||
Sbjct 299495 GACACCATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAGGGAATCCCCCCCGACCAG 299554
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || | || || || || || ||||| || || || || ||||| | || || |||
Sbjct 299555 CAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATAAC 299614
Query 172042 GTTCAAAAGGAGTCTACTCTACACCT 172067
| || |||||||| || || || ||
Sbjct 299615 ATCCAGAAGGAGTCGACCCTTCATCT 299640
>seq8
Length=1850677
Score = 113 bits (124), Expect = 6e-20
Identities = 101/127 (80%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 171965 GCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTA 172024
|||| |||||||| ||||| || || |||||||| || || ||||| ||||| || || |
Sbjct 435957 GCATCCCACCCGACCAGCAGCGCCTGATTTTTGCCGGAAAGCAGCTCGAAGACGGTCGCA 435898
Query 172025 CCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGG 172084
||||| ||||| ||| | |||||||||||||| || |||||||| || | || || |
Sbjct 435897 CCCTCAGCGATTATAACATCCAAAAGGAGTCTACCCTCCACCTTGTCCTTCGTCTGCGCG 435838
Query 172085 GTGGTGC 172091
|||||||
Sbjct 435837 GTGGTGC 435831
>seq7
Length=1743449
Score = 107 bits (118), Expect = 3e-18
Identities = 181/257 (70%), Gaps = 5/257 (2%)
Strand=Plus/Plus
Query 195732 ACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACT 195791
|||||| || | || || |||||||| ||||| || | | || || ||||| | ||
Sbjct 1192291 ACTTCAACGACGCCCAGCGTCAGGCGACTAAGGATGCCGGCACCATCGCTGGTCTCA-CT 1192349
Query 195792 GTC-TTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAAC 195850
||| || | || ||||| || || || || ||||| || || || || || ||||||||
Sbjct 1192350 GTCCTTCGTATCATCAACGAGCCCACTGCCGCTGCGATCGCCTACGGCCTTGACAAGAAA 1192409
Query 195851 AAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCA 195910
| ||| | | | || | ||| |||||||||||||| || || ||||||||
Sbjct 1192410 GGCGGCGAGTCTCAGATC--ATCG-TCTACGATCTCGGTGGTGGAACTTTCGATGTCTCC 1192466
Query 195911 CTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTA 195970
|| ||| ||| || | || | ||||| ||| ||| || || ||||| || |||||
Sbjct 1192467 CTCCTCTCTATCGACGAGGGCGTCTTCGAGGTATTGGCCACGGCCGGTGACACCCATCTC 1192526
Query 195971 GGTGGTGAAGATTTCGA 195987
|||||||| || |||||
Sbjct 1192527 GGTGGTGAGGACTTCGA 1192543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657862284874080
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