Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq6 100 3e-16 seq1 98.7 9e-16 >seq6 Length=2129081 Score = 100 bits (110), Expect = 3e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || || || |||||||| || || | | Sbjct 299720 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATCT 299779 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 299780 GACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 299839 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| || || || ||||| ||||| | | | | || || |||||| Sbjct 299840 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTATAAC 299899 Query 24884 ATTCAAAAGGAATCGACACTACACTTGG 24911 ||||| ||||| ||||| || || |||| Sbjct 299900 ATTCAGAAGGAGTCGACCCTCCATTTGG 299927 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || ||||| || || | | Sbjct 299435 ATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTTCG 299494 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || ||||| || ||||| || Sbjct 299495 GACACCATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAGGGAATCCCCCCCGACCAG 299554 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| || || || ||||| ||||| | | | | || || |||||| Sbjct 299555 CAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATAAC 299614 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTGGTG 24913 || || ||||| ||||| || || || |||| Sbjct 299615 ATCCAGAAGGAGTCGACCCTTCATCTCGGTG 299645 >seq1 Length=3320137 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || | || || || | || Sbjct 2298682 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2298741 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| |||||||| || || || || || || || |||||| Sbjct 2298742 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2298801 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | || ||||| || || ||||| |||||| | | | | || || || ||| Sbjct 2298802 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2298861 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| | || | || | ||||| || Sbjct 2298862 ATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTTCGCGGCGG 2298908 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || ||||| || | | Sbjct 2298115 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2298174 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || |||||||| || Sbjct 2298175 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 2298234 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || |||||||| |||||| | | | | || ||||| || Sbjct 2298235 CAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCCGATTACAAT 2298294 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTGGT 24912 || || ||||| || || || || |||||| Sbjct 2298295 ATCCAGAAGGAGTCTACCCTTCACCTTGGT 2298324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897521267920