Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3 116 6e-20 seq7 114 2e-19 >seq3 Length=3024150 Score = 116 bits (128), Expect = 6e-20 Identities = 224/327 (69%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| |||||||| | ||| ||| ||| ||| || ||||||||||| |||||| Sbjct 1896640 CCCTCGTCACGACTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGGCCACGCTTC 1896699 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | ||| ||||| | |||| || ||||| || |||||||| || ||||| ||| Sbjct 1896700 TTCAACCAGAAGATTGAGGCGAAAGAACCGGAGAAGAAAATGCCCTCCACAGCGGCGAAG 1896759 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||| | ||||| ||||| ||| | | || | |||||| | ||||| Sbjct 1896760 GCGACTAATCGCTCAGCAAATGTGGAGCGACGATC---GGAGATCCAGCGTAGTGCCCAG 1896816 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGC-GCGAAAGAGGTGGTCCTTCTC 794579 || ||||| | | || |||| | || || | || ||||| |||| || | Sbjct 1896817 TCCGCCTTCCTTTTGACACAGGGAATGGTCTCAACAGCATCGAAA-AGGTACTCGCGTTG 1896875 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 |||||||||| ||| || ||||| || || ||||||||||| |||||| ||||| Sbjct 1896876 CTTAGGGTCCTTGATGTAAGTATCGATAAGAAGGGAGTAGGTCTCGCTGTGGATATTTTC 1896935 Query 794640 GATGGCGATCTGGAAGCCATAAAAGCA 794666 || || ||||| || || ||||| Sbjct 1896936 CATCATAATTTGGAACCCGTAGAAGCA 1896962 Score = 109 bits (120), Expect = 9e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 793890 GTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCG 793949 |||||||| ||||| | || || ||| ||| ||| || ||||||||||| |||| Sbjct 1896263 GTGACGCCGGCCTTTGAGTAATCCGACACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTGC 1896322 Query 793950 AGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCG 794009 | ||||||| ||||| | ||| ||||| | || ||||||||| |||| ||| Sbjct 1896323 AAAGAGATCATGTCCATAAAGTCGAAGGGGTTTGTCGCGTTGTAGTGCTTTTCGCCACCG 1896382 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 || | ||||| ||||| || || || || ||||||||||||||||| ||| ||| Sbjct 1896383 AGGGCAATGAGCAGACGGTCTGCAACAAACTCGATGTACTGGCACATGAGCTTGGCATTC 1896442 Query 794070 ATGCCGATGAGCGCCACGGGCAG 794092 ||||| || ||| | || || || Sbjct 1896443 ATGCCAATCAGCCCTACAGGAAG 1896465 Score = 96.9 bits (106), Expect = 5e-14 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 793885 TCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGC 793944 |||||| || ||| |||| ||| ||| || || ||| || ||||||||||| | Sbjct 1899299 TCGATGCTACATGCGCTTTGGAATAATCGGAGACCCGTTTCTCAAAGAAGTTGGTCTTCC 1899240 Query 793945 CCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGC 794004 ||| || || |||| ||||| | ||| || |||| | ||||||||| | Sbjct 1899239 CCTGAAGGGAAATCATTTCCATGAATTCGAATGGATTGGTAGAATTGTAGTGCTTGGAGT 1899180 Query 794005 ACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGG 794064 || || || |||||||||| || ||||| ||||| ||||| || | ||| ||||||| Sbjct 1899179 TTCCAAGAGAGACAAGCAGGCGATCAGCGACAAATTCTATGTATTGACGCATCAGGGCGG 1899120 Query 794065 CGTTCATGCCGATGAG 794080 | ||||| |||||||| Sbjct 1899119 CATTCATTCCGATGAG 1899104 >seq7 Length=1743449 Score = 114 bits (126), Expect = 2e-19 Identities = 237/345 (69%), Gaps = 11/345 (3%) Strand=Plus/Minus Query 2175024 AAGGTGTGTGGCTGCGCGGCGGTGCGCACGGCATCGA--GCGCCGTTGCCACGCTGCCGT 2175081 |||| ||| || | | || | ||||| ||| |||| ||| || | |||||||||| Sbjct 1000659 AAGGCGTGCGGATTTGAGGACGAGCGCATGGCGTCGACGGCGACGGAG--ACGCTGCCGT 1000602 Query 2175082 CGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTGCACCT 2175141 |||| || ||||| ||||||| || || | | |||| || | ||||||||| | || Sbjct 1000601 CGGTCCCATTTTTGAACCCGATGGGGAAGGAGACACCCGAGGCGAGTTCGCGGTGGAGCT 1000542 Query 2175142 GGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGCCACGAGGTCTGCCAAATAGGGCG 2175201 | |||||||||||||||||| | ||||||||| | || ||| || || | || ||| Sbjct 1000541 GAGACTCGGTGGTGCGCGCGCCGATGGCGCCCCAGGACATGAGATCGGCGATGTACTGCG 1000482 Query 2175202 CCACCAAAGGGCTGAGAAACTCGACAGCC-ACGGGCTGGCCGACGTCGACGACCAGGTCG 2175260 | | | || | |||| |||| || || ||||| |||| | |||||| Sbjct 1000481 GCGAGATGGTATCAAGCAGCTCG-GAGCCGACTGGGACGCCGAGGTCGGTG---AGGTCG 1000426 Query 2175261 CGCAGCAGTCGACGCGATGTGGCG-AGGCCGGCGGCCAGGCGGCACGACCCGTCGAGGTC 2175319 | || || | || | | |||| ||||| | | || | || ||||||| ||| Sbjct 1000425 CAGAGGAGCTGGCG-GGCGAGGCGCAGGCCCTTGTTGATCTGGAAAGAGCCGTCGATGTC 1000367 Query 2175320 GGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTT 2175364 ||| ||| || ||||| ||||| ||||||||||||||||| || Sbjct 1000366 GGGATCGTTGATGAGGCCTTTCCAGCCGACGGTCGTGCGCGGTTT 1000322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916244910756146