Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 129 4e-25 seq6 87.8 1e-12 >seq1 Length=3320137 Score = 129 bits (142), Expect = 4e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33542 CCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCA 33601 ||| ||| || ||||||||||| || ||||||||||| || |||||||| |||| |||| Sbjct 2299117 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2299058 Query 33602 ATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAA 33661 |||| || || |||||||||| || ||||| || |||| | ||||| ||||| || Sbjct 2299057 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAA 2298998 Query 33662 TTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTA 33720 | ||| |||| ||| || | ||||| || || || || | |||||| || || Sbjct 2298997 TCTTCGCCTTCA-CATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTG 2298939 Query 33721 CCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||||| | || || || |||||||||||| Sbjct 2298938 CCTGTGAGGGTCTTGACGAAGATCTGCATA 2298909 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || || |||||||||||||| || || | || ||||| || ||||| || || Sbjct 2298588 CTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCGAA 2298529 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||||| || ||||| || | || | ||||| ||||| ||| ||| ||| || | Sbjct 2298528 GATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTC-ACGT 2298470 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||| || || || || | |||||||| || || || || || |||| Sbjct 2298469 TGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGTCTTTA 2298410 Query 33737 CAAAGATCTGCAT 33749 | || |||||||| Sbjct 2298409 CGAAAATCTGCAT 2298397 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || || ||||||||||| || ||||| | || || | ||||| || || || Sbjct 2298306 CTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAA 2298247 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||| || | || | ||| || ||||| ||| ||| | | |||| Sbjct 2298246 GATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTC-GCCTTGACAT 2298188 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||| || ||||| |||| ||||| || || || || || || || | Sbjct 2298187 TGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTTGA 2298128 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 2298127 CGAAGATCTGCAT 2298115 >seq6 Length=2129081 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 33540 CACCAAA-TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGT 33598 |||||| || || |||||||| || || || ||||| || || || ||||| |||| | Sbjct 300716 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCT 300657 Query 33599 CCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGG 33658 | | || || || || ||||| | |||||||| || | || | ||||| ||||| Sbjct 300656 CGAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 300597 Query 33659 CAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTT 33717 ||| ||| || | ||| ||| | ||||| || || || || | |||||| || Sbjct 300596 GAATCTTCGCCTTGA-CATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTC 300538 Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || | || || |||||||||||||| Sbjct 300537 TTACCCGTGAGGGTCTTGACAAAGATCTGCAT 300506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703943914880