Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1 107 5e-18 >seq1 Length=3320137 Score = 107 bits (118), Expect = 5e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||| | ||| || | || || || ||||||||| | || || || ||| || Sbjct 2298400 CAGAT-TTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTCGGA 2298458 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || || ||| |||||||| || || ||||| ||| || ||| || Sbjct 2298459 CACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCAGCA 2298518 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | |||||||| |||||||||||||| ||||| | ||| | |||||||||| | Sbjct 2298519 ACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAATAT 2298578 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTG 206377 ||||||||||||||| | ||||||| Sbjct 2298579 TCAGAAAGAGTCTACTTTGCACCTTG 2298604 Score = 95.1 bits (104), Expect = 3e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || |||||| | |||||||| ||| ||| Sbjct 2298118 CAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCGGAC 2298177 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || || || ||| || Sbjct 2298178 ACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAG 2298237 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| || || ||| | || ||||| | || | |||||||||| || Sbjct 2298238 CGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCCGATTACAATATC 2298297 Query 206353 CAGAAAGAGTCTACTCTTCACCTTG 206377 ||||| |||||||| |||||||||| Sbjct 2298298 CAGAAGGAGTCTACCCTTCACCTTG 2298322 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || |||||||| || || ||||| ||||| || || ||| ||| Sbjct 2298913 CAGATCTTCGTCAAGACCCTCACAGGCAAGACAATCACGTTGGAGGTAGAGTCTTCGGAC 2298972 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||||| || ||||| || ||||||| ||| Sbjct 2298973 ACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAGCAA 2299032 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || || ||||| ||||| || || | || | | ||||||||| | Sbjct 2299033 CGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACAACATT 2299092 Query 206353 CAGAAAGAG 206361 ||||||||| Sbjct 2299093 CAGAAAGAG 2299101 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || ||||| ||||| || || || ||| Sbjct 2298685 CAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCCGAC 2298744 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| |||| || ||||| || ||| || || || || || || ||||| || Sbjct 2298745 ACAATCGATAATGTCAAAGCGAA-GATCCAGGATAAGGAGGGCATCCCACCGGATCAACA 2298803 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | ||||| || || || |||||| | || ||||| |||| | |||| |||||| | Sbjct 2298804 GCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAACAT 2298863 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||| ||||| || ||||||||||| Sbjct 2298864 CCAGAAGGAGTCGACGCTTCACCTTGT 2298890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820588010894