Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq6 127 2e-24
seq1 123 2e-23
>seq6
Length=2129081
Score = 127 bits (140), Expect = 2e-24
Identities = 153/208 (74%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 35529 CCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCA 35588
||||||| | || |||||| |||||||| || || | | ||| || |||| || |
Sbjct 299927 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 299868
Query 35589 GCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGA 35648
||||||| ||||| || ||||| ||||||||||| | || | || |||||||||| ||
Sbjct 299867 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 299808
Query 35649 TCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTAC 35708
|||| ||| | | | | |||||| || |||||||| | ||||||||| || |
Sbjct 299807 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 299748
Query 35709 CCGTCAAAGTTTTCACAAATATCTGCAT 35736
| ||||| || ||||| || ||||||||
Sbjct 299747 CAGTCAACGTCTTCACGAAGATCTGCAT 299720
Score = 120 bits (132), Expect = 3e-22
Identities = 146/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599
|| |||||||| || || ||||| || | || ||| || |||| || |||||||| |||
Sbjct 300702 GTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCC 300643
Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659
|| || || | ||||||||||| | ||||| | ||||||||| ||||| |||
Sbjct 300642 GCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTG 300583
Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719
| | | | | |||||| || || ||||||| |||||| || |||||||| | ||
Sbjct 300582 ACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTACCCGTGAGGGTC 300523
Query 35720 TTCACAAATATCTGCATTC 35738
|| ||||| ||||||||||
Sbjct 300522 TTGACAAAGATCTGCATTC 300504
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| |||||||| || |||| | || || |||| || |||||||| ||||| ||
Sbjct 300193 CTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAA 300134
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| ||||||||||||| |||| || |||||| || ||||| ||||| |
Sbjct 300133 GATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTCACGTT 300074
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| || || ||||| | ||| ||||| || ||||| | || || ||
Sbjct 300073 ATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGAC 300014
Query 35725 AAATATCTGCAT 35736
|| || |||||
Sbjct 300013 GAAAATTTGCAT 300002
Score = 98.7 bits (108), Expect = 9e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || ||||| || || | | ||| || |||| || |||||||| ||||| ||
Sbjct 299626 CTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 299567
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| ||||||||||| | || | | |||||||||| ||||| ||||| |
Sbjct 299566 GATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATCTTCGCCTTCACGTT 299507
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || |||||||| | |||||||| || || || | || |||||
Sbjct 299506 ATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCAGTGAGGGTCTTCAC 299447
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 299446 GAAGATCTGCAT 299435
Score = 89.7 bits (98), Expect = 5e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || || ||||| || | | || || | || || || ||||| || || ||
Sbjct 300421 CTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCAGCGAA 300362
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||| | || | | |||||||||| |||||| ||||| ||
Sbjct 300361 AATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCA-CGT 300303
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | |||||| ||| || ||||| | ||||||||| || || |||| || || |
Sbjct 300302 TGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTGA 300243
Query 35724 CAAATATCTGCAT 35736
| || ||||||||
Sbjct 300242 CGAAGATCTGCAT 300230
>seq1
Length=3320137
Score = 123 bits (136), Expect = 2e-23
Identities = 157/212 (74%), Gaps = 3/212 (1%)
Strand=Plus/Minus
Query 35527 CACCAAA-TGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGT 35585
|||||| || || ||| ||| || ||||| |||||||||| | |||||| | || |
Sbjct 2298607 CACCAAGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCT 2298548
Query 35586 CCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCA 35645
||| |||||| || || || |||||||| |||||||| | ||||| | |||||||||
Sbjct 2298547 CCAACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 2298488
Query 35646 TGATCTTTTGCTTCAGAGTTGCCACC-GTGTCGCTCGATTCCACCTCCACCGTGATCGTT 35704
||||| ||||| |||| || ||||| || || ||||| | ||||||||
Sbjct 2298487 GAATCTTCGCCTTCAC-GTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTC 2298429
Query 35705 TTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| ||||||||||| || || || ||||||||
Sbjct 2298428 TTCCCCGTCAAAGTCTTTACGAAAATCTGCAT 2298397
Score = 113 bits (124), Expect = 4e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| | ||| || | || || |||||||| ||||||||
Sbjct 2298873 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAA 2298814
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||| || |||| || | || |||||| ||| |||||| || | | |
Sbjct 2298813 AATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTGACATT 2298754
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| ||| || ||||||| ||||| || || || |||| ||||||||
Sbjct 2298753 ATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCAC 2298694
Query 35725 AAATATCTGCAT 35736
||| ||||||||
Sbjct 2298693 AAAGATCTGCAT 2298682
Score = 105 bits (116), Expect = 6e-18
Identities = 148/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 35529 CCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCA 35588
||| ||| | || ||||| || |||||||||||||| | | || || |||| ||||
Sbjct 2299117 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2299058
Query 35589 GCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGA 35648
||||| |||||||| |||| || |||||||||| || | || |||||||| |
Sbjct 2299057 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAA 2298998
Query 35649 TCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTAC 35708
|||| ||||| | | | | |||||| || || ||||||| |||||| || || |
Sbjct 2298997 TCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGC 2298938
Query 35709 CCGTCAAAGTTTTCACAAATATCTGCAT 35736
| || | || || || || ||||||||
Sbjct 2298937 CTGTGAGGGTCTTGACGAAGATCTGCAT 2298910
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || || |||||||||| | || ||| | || || ||||| ||||| || ||
Sbjct 2298306 CTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAA 2298247
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||| | ||| | | |||||||||| ||||| ||| | | |
Sbjct 2298246 GATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATT 2298187
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || ||||| || | ||||| || || |||||||| || || ||
Sbjct 2298186 GTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTTGAC 2298127
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 2298126 GAAGATCTGCAT 2298115
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793521111120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |