Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq6 125 7e-24 seq1 120 3e-22 >seq6 Length=2129081 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | ||||| || | ||||| ||||| |||||||| |||||| | Sbjct 300228 CCTCCACGTAGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGAATGTTATAGTCGGAA 300169 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| ||||| || || ||||| |||||||| || || || Sbjct 300168 AGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 300109 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || |||||||| || || || || | ||||| || || || || Sbjct 300108 ATGCCCTCCTTATCTTGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGACC 300049 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| || || || || | || || |||||||||||||| Sbjct 300048 TCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 300002 Score = 109 bits (120), Expect = 6e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 134506 CGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGA 134565 |||| || || || || ||||| || ||||| ||||| || |||| | ||| |||| Sbjct 299642 CGAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGA 299583 Query 134566 GCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAA 134625 |||| ||||| || || |||||||||||||| ||||| || || || || || || |||| Sbjct 299582 GCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAA 299523 Query 134626 TTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTAC 134685 | || || || || | ||||| || || ||||| ||||| || || || || | Sbjct 299522 TCTTCGCCTTCACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCC 299463 Query 134686 CGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | || || ||||| || ||||| Sbjct 299462 CAGTGAGGGTCTTCACGAAGATCTGCAT 299435 >seq1 Length=3320137 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| ||||| || ||||| || |||||||||||| || ||| | || ||| Sbjct 2298890 ACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCG 2298831 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| |||||||| | ||||| ||||| || || ||||| || || || || Sbjct 2298830 AGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGG 2298771 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || |||||| || | |||||||||||| || || || | || ||||| || Sbjct 2298770 ATCTTCGCTTTGACATTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTG 2298711 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||||| || || || ||||| Sbjct 2298710 CCAGTCAGGGTTTTCACAAAGATCTGCAT 2298682 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 134523 TCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAA 134582 || || ||||||||||| || || ||| || ||| || | || ||||| |||||| Sbjct 2299100 TCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAATTGCTTGCCCGCAAAA 2299041 Query 134583 ATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCG 134642 |||| || ||||| || ||||| |||||||| || |||||||| || || || Sbjct 2299040 ATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTCACATTA 2298981 Query 134643 TCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 || | ||||| || || || || || | || || || || || || | || || ||| Sbjct 2298980 TCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGCCTGTGAGGGTCTTGACG 2298921 Query 134703 AAAATTTGCAT 134713 || || ||||| Sbjct 2298920 AAGATCTGCAT 2298910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398311555280