Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3 167 3e-36 >seq3 Length=3024150 Score = 167 bits (184), Expect = 3e-36 Identities = 373/558 (67%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 ||||| || || ||| | || || || | |||||| | |||||||||||| || | Sbjct 1898941 CAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAA 1898882 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 |||||||| ||||| || || || ||||| || || | |||||||||||| || |||||| Sbjct 1898881 CCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAG 1898822 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT----ATG 39792 || |||||||| || || || || || | ||| | ||| | | | || | Sbjct 1898821 ATCCCTTCTACCGCCGCGAACGCTACCAACCTCGTGGCA-AACGTCGACCGTTGGTCAGA 1898763 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 |||||| | | ||||| || | |||| ||| || || || || || || || | ||| Sbjct 1898762 GATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATT 1898703 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 ||||| | | | || | || ||||| || | ||| || | Sbjct 1898702 GAAGAGGAGGCCACGCTGCTGAGAGTCAGAGATGTAGGTATCGATGAGGAGAGAGTATGT 1898643 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 ||| || || |||||||| ||| || |||||||| |||||||| | |||||| Sbjct 1898642 TTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGGACTTCAGCGGC 1898583 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 |||||| || |||| | ||| ||| ||| || || || || || || |||||| Sbjct 1898582 TTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCGGC 1898523 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA---TTCCA 40089 ||||||||||| |||| | || |||| ||| | | ||| ||| ||||| Sbjct 1898522 AAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTGTCATTCAGGTTATCGTTCCA 1898463 Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149 ||| ||||||||| || ||||| | ||||| | ||||||||||| |||| || || Sbjct 1898462 GTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGCCTGGGCTTT 1898403 Query 40150 TTTGTACATGTTCCATAT 40167 |||||||| | ||| || Sbjct 1898402 CTTGTACATCTGCCAAAT 1898385 Score = 118 bits (130), Expect = 1e-21 Identities = 369/568 (65%), Gaps = 10/568 (2%) Strand=Plus/Plus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| ||||| |||||||| ||| | ||||| || | ||| || | ||| || || Sbjct 1896610 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1896669 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || |||||||||||||| || |||||||| || | ||| || || | || ||||| || Sbjct 1896670 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1896729 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC- 39786 || ||||| ||||| || || || || || || || | || ||| | || || | | Sbjct 1896730 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGC-AAATGTGGAGCG 1896788 Query 39787 ---ATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843 || ||||| ||||||| || || ||| | || ||||| || || || || Sbjct 1896789 ACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTC 1896848 Query 39844 TATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAG 39903 | ||||| || || || | || | | || || | || ||||| || | || Sbjct 1896849 AACAGCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAG 1896908 Query 39904 ACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGC 39963 || | || ||||| ||||| ||| || || || ||||| || || | || Sbjct 1896909 GGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGC 1896968 Query 39964 TTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATC 40023 |||| || ||||| | || | || | | || || || || || ||||| Sbjct 1896969 CTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCATC 1897028 Query 40024 ACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA--- 40080 | ||||||||||| || | ||||| | ||| | |||| | || || Sbjct 1897029 AGAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCAT-TGTCGTTAAGGC 1897087 Query 40081 -TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACG 40139 ||||||||||| | || ||||||||| | || | ||||| || ||||| || |||| Sbjct 1897088 GGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACG 1897147 Query 40140 CCTCTGCCTTTTTGTACATGTTCCATAT 40167 | || || ||||||||||| | ||| || Sbjct 1897148 CTTCAGCTTTTTTGTACATTTGCCAGAT 1897175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908679790960