Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3 178 1e-39 >seq3 Length=3024150 Score = 178 bits (196), Expect = 1e-39 Identities = 394/576 (68%), Gaps = 29/576 (5%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||||| |||||||| ||||| ||||| || |||||||| | ||||| | ||| || Sbjct 1898385 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1898444 Query 43790 ACTAAAGA---CTTAGCACATTGGATTGCATTAA---AACCACAA-GAAAAACATTTTAT 43842 | ||||| ||| | | |||| | || | || |||| ||| ||||| || Sbjct 1898445 TCCAAAGATATCTTCG---ACTGGAACG-ATAACCTGAATGACAACGAACGCCATTTCAT 1898500 Query 43843 ATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAG 43902 ||| | || |||| |||||||| || |||||| || ||||| || ||| |||| Sbjct 1898501 ATCATATGTCCTGGCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGA 1898560 Query 43903 TCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| || ||||| ||| | |||| || ||||||||||| |||||||| Sbjct 1898561 GCGGTTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCAT 1898620 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA--- 44019 || ||||| ||||| ||||||| ||| ||| || || ||||| |||||| || Sbjct 1898621 GATGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATCTCTGACTC 1898680 Query 44020 TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATA 44078 | ||| | | || || | || ||| |||| || || |||| |||| | || || | Sbjct 1898681 TCAGCA-GCGTGGCCTC--CTCTTCAATTCGATCGAGACTATACCATGCG-TCAAGCAGA 1898736 Query 44079 AAGCAGACTGGGCCCTTAAATGGATAAAT-TCAAATGAT--TCTTTTGGAGAACGA--CT 44133 | | || |||||||| | ||||| | | || | | | |||| |||| | Sbjct 1898737 AGACCGAGTGGGCCCTCAGGTGGATCTCTGACCAACGGTCGACGTTTG--CCACGAGGTT 1898794 Query 44134 TGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTG 44193 || ||||| || | || ||||| || ||||| || ||||| ||||| | || || || Sbjct 1898795 GGTAGCGTTCGCGGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTG 1898854 Query 44194 GTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGA 44253 | | |||||||||||| | |||||||| || || ||||| || || | || ||||| || Sbjct 1898855 GCTGAAGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGA 1898914 Query 44254 TGAAGGCTTACATTGCGATTTTGCTTG---CTTGTT 44286 ||||| | ||| |||||||| || |||||| Sbjct 1898915 CGAAGGGATGCATACAGATTTTGCCTGTCTCTTGTT 1898950 Score = 111 bits (122), Expect = 1e-19 Identities = 375/571 (66%), Gaps = 26/571 (5%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || |||||||||||||||||||| | ||||| || ||||| || ||||| | || || Sbjct 1897175 ATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTG 1897116 Query 43790 ACTAAAGACTTAGCAC-ATTGGATT----GCATTAAAACCACAA-GAAAAACATTTTATA 43843 | ||||| | ||| | |||| | || |||| | |||| || || ||| | Sbjct 1897115 TCAAAAGATCTC-CACGACTGGAATAACCGCCTTAA--CGACAATGAGCGTCACTTTGTC 1897059 Query 43844 TCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGT 43903 || || | ||||||||||| || || || || ||||| || || | ||| Sbjct 1897058 TCGCATGTCCTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAG 1896999 Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || || || | || ||||| | || || || || || || ||||| |||||| Sbjct 1896998 CGCTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATG 1896939 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA---T 44020 || |||||||| || || | ||| ||||| || ||||| |||||||| || | Sbjct 1896938 ATGGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCT 1896879 Query 44021 GGGCA-CGAGAAGCATCGATTGTTTAATGCGATAGAAAC-AGTACCTGCGATTAAACATA 44078 ||| || || | | | | || |||| | || || | | |||| | | ||| | Sbjct 1896878 AAGCAACGCGA-GTACC---TTTTCGATGCTGTTGAGACCATTCCCTGTG-TCAAAAGGA 1896824 Query 44079 AAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT-----TTTGGAGAACGACT 44133 | || |||||||| || ||||| | | | | || |||| || ||| | Sbjct 1896823 AGGCGGACTGGGCACTACGCTGGATC--TCCGATCGTCGCTCCACATTTGCTGAGCGATT 1896766 Query 44134 TGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTG 44193 ||||| || || | |||||| ||||||||||| || || || || || | || || || Sbjct 1896765 AGTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTG 1896706 Query 44194 GTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGA 44253 ||| ||||| || || | |||||||| | || || || ||||| | || |||||||| Sbjct 1896705 GTTGAAGAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGA 1896646 Query 44254 TGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 || || | ||| ||| || || |||||| Sbjct 1896645 CGAGGGAATGCATACCGACTTCGCATGCTTG 1896615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455932184070