Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 105 8e-18 seq5 84.2 3e-11 >seq3 Length=3024150 Score = 105 bits (116), Expect = 8e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 |||||||||||| | |||| || || ||| ||||| || |||||||| ||||| ||| Sbjct 1896779 TTTGCTGAGCGATTAGTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTC 1896720 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 | | || | ||| | |||||||| || |||||||| || ||| ||||||||| || Sbjct 1896719 GCCTCAATCTTCTGGTTGAAGAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAA 1896660 Query 94918 CTTATCTCTCGTGACGAGGGA 94938 || ||| ||||||||||||| Sbjct 1896659 CTCATCAGTCGTGACGAGGGA 1896639 >seq5 Length=2324656 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/227 (70%), Gaps = 9/227 (4%) Strand=Plus/Plus Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572 || || ||||| | || |||||||| |||| ||||| |||| | ||| || || Sbjct 534505 GGTACCAATGGATATTCTAATGGTATTGTTCCCATGCTCCGCGCGTACGACGAGACTGCT 534564 Query 104573 CGCTATGTAAATCAAGCTGGGCGTCGAAA----GGGATCTATCGCAGTCTATCTTGAGCC 104628 |||||||| |||||| || | || ||| || ||||| ||||| ||||||| Sbjct 534565 CGCTATGTCGATCAAGGCGGTAA-CAAACTCCCGGGCGCTTTCGCAATCTATATTGAGCC 534623 Query 104629 ATGGCACGCGGATATCAT-GGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG 104687 |||||| || |||| ||| |||||| | || | ||| ||||| || | ||||| | Sbjct 534624 ATGGCATGCCGATA-CATATGAGTTCGTCGACCTCCGTAAAAACCACGGCAAGGAGGAAG 534682 Query 104688 CGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 104733 | |||| ||||| ||||||| || || ||||| || ||||| || Sbjct 534683 TTC-GTGCACGCGACCTCTTCTATGCACTTTGGATCCCCGATCTTTT 534728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260697929360