Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq3 105 8e-18
seq5 84.2 3e-11
>seq3
Length=3024150
Score = 105 bits (116), Expect = 8e-18
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857
|||||||||||| | |||| || || ||| ||||| || |||||||| ||||| |||
Sbjct 1896779 TTTGCTGAGCGATTAGTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTC 1896720
Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917
| | || | ||| | |||||||| || |||||||| || ||| ||||||||| ||
Sbjct 1896719 GCCTCAATCTTCTGGTTGAAGAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAA 1896660
Query 94918 CTTATCTCTCGTGACGAGGGA 94938
|| ||| |||||||||||||
Sbjct 1896659 CTCATCAGTCGTGACGAGGGA 1896639
>seq5
Length=2324656
Score = 84.2 bits (92), Expect = 3e-11
Identities = 159/227 (70%), Gaps = 9/227 (4%)
Strand=Plus/Plus
Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572
|| || ||||| | || |||||||| |||| ||||| |||| | ||| || ||
Sbjct 534505 GGTACCAATGGATATTCTAATGGTATTGTTCCCATGCTCCGCGCGTACGACGAGACTGCT 534564
Query 104573 CGCTATGTAAATCAAGCTGGGCGTCGAAA----GGGATCTATCGCAGTCTATCTTGAGCC 104628
|||||||| |||||| || | || ||| || ||||| ||||| |||||||
Sbjct 534565 CGCTATGTCGATCAAGGCGGTAA-CAAACTCCCGGGCGCTTTCGCAATCTATATTGAGCC 534623
Query 104629 ATGGCACGCGGATATCAT-GGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG 104687
|||||| || |||| ||| |||||| | || | ||| ||||| || | ||||| |
Sbjct 534624 ATGGCATGCCGATA-CATATGAGTTCGTCGACCTCCGTAAAAACCACGGCAAGGAGGAAG 534682
Query 104688 CGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 104733
| |||| ||||| ||||||| || || ||||| || ||||| ||
Sbjct 534683 TTC-GTGCACGCGACCTCTTCTATGCACTTTGGATCCCCGATCTTTT 534728
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260697929360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |