Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq5 104 3e-17
seq3 96.9 4e-15
>seq5
Length=2324656
Score = 104 bits (114), Expect = 3e-17
Identities = 143/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 78185 CGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCA 78244
|||||| |||| ||||||||||| |||||||| || |||||| ||||| | |||||
Sbjct 536470 CGCGTG--CGCAGGTAGTACATGCCGGTCTTGAGCCCACGCTTCCAGCCGTAAAAGTGCA 536413
Query 78245 TACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGT 78304
| || | |||| | | || |||| || || | || ||| || || || ||||||
Sbjct 536412 TGCTGGTGAGCTGGCCGAGCGTCGGAGACTGCAAGTGGACGTTTAGAGATTGTGACTGGC 536353
Query 78305 CGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGA 78364
|||| |||| || ||||| || || | ||| | ||| ||| |||| ||||||||||
Sbjct 536352 AGATGAACGCTCCACGGTCCGCAGCGAGGTCAAGAACCCTCTTCTGCGAGATCTCCCAGA 536293
Query 78365 TGGTCCGGTAAATGGCCTT 78383
|||| || || |||||
Sbjct 536292 CGGTCTTATAGATCGCCTT 536274
Score = 98.7 bits (108), Expect = 1e-15
Identities = 143/202 (71%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 20616 ACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGG 20675
|| |||||| || || | |||||| ||||| ||| | |||||||| | | ||| | |
Sbjct 536269 ACGTCAAGGCGATCTATAAGACCGTCTGGGAGATCTCGCAGAAGAGGGTTCTTGACCTCG 536328
Query 20676 CGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATC 20735
| || || || || || | |||| |||||| || || || || ||| | || || ||
Sbjct 536329 CTGCGGACCGTGGAGCGTTCATCTGCCAGTCACAATCTCTAAACGTCCACTTGCAGTCTC 536388
Query 20736 CGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGG 20795
||| || | |||| | | |||||| | ||||||||| | ||||||||||| |
Sbjct 536389 CGACGCTCGGCCAGCTCACCAGCATGCACTTTTACGGCTGGAAGCGTGGGCTCAAGACCG 536448
Query 20796 GCATGTACTATCTGCGGACCCG 20817
|||||||||| ||||| || ||
Sbjct 536449 GCATGTACTACCTGCGCACGCG 536470
Score = 86.0 bits (94), Expect = 7e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 79387 AAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCC 79446
|| || || |||||||| || || |||||||||||| ||| | ||||| | |||
Sbjct 534728 AAAAGATCGGGGATCCAAAGTGCATAGAAGAGGTCGCGTGCACGAACTTCCTCCTTGCCG 534669
Query 79447 TGGTTCAGACGCAGCTCGAGAAAGTCC-ATGATGTCGGCGTGCCACGGCTCCAGATAGAT 79505
||||| ||| || |||| || || ||| | ||||| ||||| ||||| | ||||||
Sbjct 534668 TGGTTTTTACGGAGGTCGACGAACTCATATG-TATCGGCATGCCATGGCTCAATATAGAT 534610
Query 79506 GGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAA 79565
||||| | ||| | | ||| ||||| || | ||| || || || || | || | |
Sbjct 534609 TGCGAAAGCGCCCGGGAGTTTGTTACCGCCTTGATCGACATAGCGAGCAGTCTCGTCGTA 534550
Query 79566 AACTCGGAGCATGGGCACGATGCC 79589
| ||||||||||| || || ||
Sbjct 534549 CGCGCGGAGCATGGGAACAATACC 534526
>seq3
Length=3024150
Score = 96.9 bits (106), Expect = 4e-15
Identities = 115/153 (75%), Gaps = 6/153 (4%)
Strand=Plus/Minus
Query 60276 CAGTACATTCAGTTTGTCGCGGACCGCCT---CATGGCCCAGTTTGGAGAAGGACCAATT 60332
|||||||| ||||||| || ||||| || ||| |||| ||| ||| | || |
Sbjct 1896423 CAGTACATCGAGTTTGTTGCAGACCGTCTGCTCATTGCCCTCGGTGGCGAAA-AGCACT- 1896366
Query 60333 TACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAAC 60392
|| || || ||||| ||||||| ||||| | ||||| ||| | ||||||||||||
Sbjct 1896365 -ACAACGCGACAAACCCCTTCGACTTTATGGACATGATCTCTTTGCAGGGGAAGACCAAC 1896307
Query 60393 TTCTTTGAGAAGCGGGTCGGGGATTATTCAAAG 60425
||||||||||||||||| |||||| ||||||
Sbjct 1896306 TTCTTTGAGAAGCGGGTGTCGGATTACTCAAAG 1896274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548524704008160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |