Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5 104 3e-17 seq3 96.9 4e-15 >seq5 Length=2324656 Score = 104 bits (114), Expect = 3e-17 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 78185 CGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCA 78244 |||||| |||| ||||||||||| |||||||| || |||||| ||||| | ||||| Sbjct 536470 CGCGTG--CGCAGGTAGTACATGCCGGTCTTGAGCCCACGCTTCCAGCCGTAAAAGTGCA 536413 Query 78245 TACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGT 78304 | || | |||| | | || |||| || || | || ||| || || || |||||| Sbjct 536412 TGCTGGTGAGCTGGCCGAGCGTCGGAGACTGCAAGTGGACGTTTAGAGATTGTGACTGGC 536353 Query 78305 CGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGA 78364 |||| |||| || ||||| || || | ||| | ||| ||| |||| |||||||||| Sbjct 536352 AGATGAACGCTCCACGGTCCGCAGCGAGGTCAAGAACCCTCTTCTGCGAGATCTCCCAGA 536293 Query 78365 TGGTCCGGTAAATGGCCTT 78383 |||| || || ||||| Sbjct 536292 CGGTCTTATAGATCGCCTT 536274 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 20616 ACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGG 20675 || |||||| || || | |||||| ||||| ||| | |||||||| | | ||| | | Sbjct 536269 ACGTCAAGGCGATCTATAAGACCGTCTGGGAGATCTCGCAGAAGAGGGTTCTTGACCTCG 536328 Query 20676 CGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATC 20735 | || || || || || | |||| |||||| || || || || ||| | || || || Sbjct 536329 CTGCGGACCGTGGAGCGTTCATCTGCCAGTCACAATCTCTAAACGTCCACTTGCAGTCTC 536388 Query 20736 CGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGG 20795 ||| || | |||| | | |||||| | ||||||||| | ||||||||||| | Sbjct 536389 CGACGCTCGGCCAGCTCACCAGCATGCACTTTTACGGCTGGAAGCGTGGGCTCAAGACCG 536448 Query 20796 GCATGTACTATCTGCGGACCCG 20817 |||||||||| ||||| || || Sbjct 536449 GCATGTACTACCTGCGCACGCG 536470 Score = 86.0 bits (94), Expect = 7e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 79387 AAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCC 79446 || || || |||||||| || || |||||||||||| ||| | ||||| | ||| Sbjct 534728 AAAAGATCGGGGATCCAAAGTGCATAGAAGAGGTCGCGTGCACGAACTTCCTCCTTGCCG 534669 Query 79447 TGGTTCAGACGCAGCTCGAGAAAGTCC-ATGATGTCGGCGTGCCACGGCTCCAGATAGAT 79505 ||||| ||| || |||| || || ||| | ||||| ||||| ||||| | |||||| Sbjct 534668 TGGTTTTTACGGAGGTCGACGAACTCATATG-TATCGGCATGCCATGGCTCAATATAGAT 534610 Query 79506 GGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAA 79565 ||||| | ||| | | ||| ||||| || | ||| || || || || | || | | Sbjct 534609 TGCGAAAGCGCCCGGGAGTTTGTTACCGCCTTGATCGACATAGCGAGCAGTCTCGTCGTA 534550 Query 79566 AACTCGGAGCATGGGCACGATGCC 79589 | ||||||||||| || || || Sbjct 534549 CGCGCGGAGCATGGGAACAATACC 534526 >seq3 Length=3024150 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/153 (75%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 60276 CAGTACATTCAGTTTGTCGCGGACCGCCT---CATGGCCCAGTTTGGAGAAGGACCAATT 60332 |||||||| ||||||| || ||||| || ||| |||| ||| ||| | || | Sbjct 1896423 CAGTACATCGAGTTTGTTGCAGACCGTCTGCTCATTGCCCTCGGTGGCGAAA-AGCACT- 1896366 Query 60333 TACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAAC 60392 || || || ||||| ||||||| ||||| | ||||| ||| | |||||||||||| Sbjct 1896365 -ACAACGCGACAAACCCCTTCGACTTTATGGACATGATCTCTTTGCAGGGGAAGACCAAC 1896307 Query 60393 TTCTTTGAGAAGCGGGTCGGGGATTATTCAAAG 60425 ||||||||||||||||| |||||| |||||| Sbjct 1896306 TTCTTTGAGAAGCGGGTGTCGGATTACTCAAAG 1896274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524704008160