Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 seq10 89.7 6e-13 seq9 82.4 8e-11 >seq5 Length=2324656 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| ||| || ||| || |||||||| | |||||||| | ||||| | || Sbjct 536272 TCAAGGCGATCTATAAGACCGTCTGGGAGATCTCGCAGAAGAGGGTTCTTGACCTCGCTG 536331 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | || ||||| |||| |||| |||||| || ||||| ||| || | || || ||| Sbjct 536332 CGGACCGTGGAGCGTTCATCTGCCAGTCACAATCTCTAAACGTCCACTTGCAGTCTCCGA 536391 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | || | | || | | | |||||||||||||| |||||| || |||||||| || | Sbjct 536392 CGCTCGGCCAGCTCACCAGCATGCACTTTTACGGCTGGAAGCGTGGGCTCAAGACCGGCA 536451 Query 55908 TGTACTATCTGCGGACCCG 55926 ||||||| ||||| || || Sbjct 536452 TGTACTACCTGCGCACGCG 536470 >seq10 Length=1360357 Score = 89.7 bits (98), Expect = 6e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 124671 GTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATG 124730 || ||||||||||||||||| | || || ||| |||||||||||| || || Sbjct 441219 GTGATCTTGCGCGTCACAAAGGTGCGGCCACGACGCGGGCTCTCGTGGTTGAAAAGGATA 441160 Query 124731 CCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAG 124790 || | |||||| |||| ||||||| ||| | |||||| || ||||| || | | Sbjct 441159 CCGTTGCACGCATACATGCCGTACGCCTCCCTGTAGTTCTTGCAGATCCAGAACGCGTAC 441100 Query 124791 AGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837 ||||| | |||||||| ||| || |||||||| || ||||| || Sbjct 441099 AGCTTTGCAACGCCATACGGGGAGCGCGGGTAGAACGGCGTGTTCTC 441053 >seq9 Length=1678725 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 118172 GCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCC 118231 || || || |||||| || ||||| || ||||| || || ||||| || || || || Sbjct 1435879 GCTTCGCGCACGTTGAGCATTTTACCGCGAAGTGGGAAGACTCCAAAGTTATCGCGCCCG 1435938 Query 118232 ACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGA 118291 || || | ||| || |||| |||||||||||| || || || || || || | ||||||| Sbjct 1435939 ACGACACCCAATCCCGCAACAGCAAGGGCCTTGGCAGAATCTCCTTCAGTGAGAATAAGA 1435998 Query 118292 GTGCA 118296 || || Sbjct 1435999 GTACA 1436003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215904237200