Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6 178 1e-39 seq1 156 5e-33 seq8 98.7 1e-15 seq5 95.1 1e-14 seq3 87.8 2e-12 >seq6 Length=2129081 Score = 178 bits (196), Expect = 1e-39 Identities = 163/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || ||||| ||||| | Sbjct 300230 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAGTCGTCT 300289 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || ||||||||||||||||| || || || |||||| Sbjct 300290 GACACGATCGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAG 300349 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| ||||| |||||||||||||||| || || || | ||||| ||| Sbjct 300350 CAGCGCCTCATTTTCGCTGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAAT 300409 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || ||||||||||| Sbjct 300410 ATCCAGAAGGAGTCGACTCTTCATCT 300435 Score = 161 bits (178), Expect = 1e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || || ||||| || || || ||||| ||||| Sbjct 300505 AATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACAATCACGCTGGAGGTCGAGTCTTC 300564 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | ||||| || |||||||||||||| || |||||||| ||||| Sbjct 300565 GGACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 300624 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || ||||| || || ||||| |||||||| | ||| ||||| | ||||| || Sbjct 300625 GCAGCGCCTCATTTTCGCGGGCAAGCAGCTCGAGGACGGTCGCACCCTGTCTGACTACAA 300684 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCT 27611 | |||| ||||| ||| ||||| || Sbjct 300685 TATCCAGAAGGAGAGCACCCTTCACCT 300711 Score = 156 bits (172), Expect = 5e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || || || ||||| ||||| Sbjct 299435 ATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTTCG 299494 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || |||||||||||||||||||| || || |||||| Sbjct 299495 GACACCATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAGGGAATCCCCCCCGACCAG 299554 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || || || ||||| |||||||| | || ||||| | |||||||| Sbjct 299555 CAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATAAC 299614 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || || |||||||| Sbjct 299615 ATCCAGAAGGAGTCGACCCTTCATCT 299640 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| || || |||||||| ||||| || ||||| ||||| | Sbjct 300002 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 300061 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || ||||| || |||||||| ||||| || |||||| Sbjct 300062 GACACGATCGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAG 300121 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| ||||| || | || || || | |||||||| Sbjct 300122 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACTATAAC 300181 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||||| | ||||| ||| | ||||| || || || Sbjct 300182 ATTCAGAAGGAGTCCACCTTGCATCTCGTCCTTCGTCTACGTGGAGG 300228 Score = 129 bits (142), Expect = 7e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||| | || || ||||| || || || ||||| |||||| | Sbjct 299720 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATCT 299779 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 299780 GACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 299839 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| |||||||| | || ||||| | |||||||| Sbjct 299840 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTATAAC 299899 Query 27586 GTCCAAAAGGAATCCACTCTTCAT 27609 | || ||||| || || || ||| Sbjct 299900 ATTCAGAAGGAGTCGACCCTCCAT 299923 >seq1 Length=3320137 Score = 156 bits (172), Expect = 5e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || |||||||| || |||||||| || ||||| Sbjct 2298115 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2298174 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || ||||||||||||||||| || ||||| |||||| Sbjct 2298175 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 2298234 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || |||||||| || || ||||||| || || || | || || ||| Sbjct 2298235 CAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCCGATTACAAT 2298294 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || || ||||| || Sbjct 2298295 ATCCAGAAGGAGTCTACCCTTCACCT 2298320 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || |||||||| || || | ||||| ||||| Sbjct 2298682 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2298741 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || || || || ||||| |||||||| || || || || || Sbjct 2298742 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2298801 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || |||||||| || ||||| |||||||||| || ||||| | ||||| || Sbjct 2298802 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2298861 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || ||| | ||||||||||| || Sbjct 2298862 ATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTTCGCGGCGG 2298908 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| | || || ||||| || ||||| ||||| ||||| Sbjct 2298397 ATGCAGATTTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2298456 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||||| || |||||||||||||| || |||||||| |||||| Sbjct 2298457 GACACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCAG 2298516 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || || ||||| ||||| | ||||||| || || || | || || ||| Sbjct 2298517 CAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAAT 2298576 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || || || || ||| | || || Sbjct 2298577 ATTCAGAAAGAGTCTACTTTGCACCT 2298602 Score = 109 bits (120), Expect = 6e-19 Identities = 184/282 (65%), Gaps = 52/282 (18%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| || |||||||||||||| || |||||||||||||| Sbjct 2297832 ATCATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACTATCACGCTTGAGGTTGAGTCT 2297891 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGG-------------- 27508 |||| ||| | ||| | ||||| || |||||||| ||||||| Sbjct 2297892 TCCGATACCATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGGTGGGTCCCTCAC 2297951 Query 27509 --------------------------------------GAATTCCTCCAGACCAGCAGCG 27530 | |||||||| ||||| || || Sbjct 2297952 GACGTGATCCCTGGCTTCATATCACTCATAGTCGCTTAGCATTCCTCCCGACCAACAACG 2298011 Query 27531 TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA 27590 ||| ||||| ||||| || || |||||||||| ||||| | | ||||| || |||| Sbjct 2298012 TCTCATTTTCGCTGGAAAACAGCTCGAGGATGGCCGTACATTGTCTGACTACAACATCCA 2298071 Query 27591 AAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| ||||||||||| |||||||| || || || || Sbjct 2298072 GAAGGAATCGACTCTTCATCTCGTCTTGCGCCTCCGTGGCGG 2298113 >seq8 Length=1850677 Score = 98.7 bits (108), Expect = 1e-15 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || || || ||||||||||| || |||||||| || ||||| ||||| || | ||| ||| Sbjct 435955 ATCCCACCCGACCAGCAGCGCCTGATTTTTGCCGGAAAGCAGCTCGAAGACGGTCGCACC 435896 Query 27571 CT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGG 27629 || ||| || ||||| |||||||||| || || || || || ||| | ||||| ||||| Sbjct 435895 CTCAGC-GATTATAACATCCAAAAGGAGTCTACCCTCCACCTTGTCCTTCGTCTGCGCGG 435837 Query 27630 TGG 27632 ||| Sbjct 435836 TGG 435834 >seq5 Length=2324656 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATA 80094 ||||| ||||| ||||||||||| |||||||| || |||||||||||| | |||||| Sbjct 536470 CGCGTGCGCAGGTAGTACATGCCGGTCTTGAGCCCACGCTTCCAGCCGTAAAAGTGCATG 536411 Query 80095 GAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAG 80154 |||||| | || || || || || | || ||| ||||| || ||||| ||| Sbjct 536410 CTGGTGAGCTGGCCGAGCGTCGGAGACTGCAAGTGGACGTTTAGAGATTGTGACTGGCAG 536351 Query 80155 ATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACT 80214 ||||| || ||||| || || || | |||| || ||| || | || ||||| || Sbjct 536350 ATGAACGCTCCACGGTCCGCAGCGAGGTCAAGAACCCTCTTCTGCGAGATCTCCCAGACG 536291 Query 80215 GT 80216 || Sbjct 536290 GT 536289 >seq3 Length=3024150 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/185 (72%), Gaps = 7/185 (4%) Strand=Plus/Plus Query 64981 CTCATCGGCATGGATGCCGATAAGATGAAACAGTATATCGAATTTGTAGCAGATCGCCTG 65040 |||||||| ||| |||||| |||| || || || |||||||| || ||||||||| Sbjct 1899104 CTCATCGGAATGAATGCCGCCCTGATGCGTCAATACATAGAATTTGTCGCTGATCGCCTG 1899163 Query 65041 CTT-ACTCAGTTTGGTATT--AAGCCCTACTGGAATTCTTCAAATCCATTTGACTGGATG 65097 ||| ||| || | | | |||| |||| |||||| | |||||||| || | ||| Sbjct 1899164 CTTGTCTCTCTTGGAAACTCCAAGCACTAC---AATTCTACCAATCCATTCGAATTCATG 1899220 Query 65098 GAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTGAAAAGAGGGTAGGTGATTACT-C 65156 || | ||| ||| |||||||||| ||||| ||||| || |||| ||||| | | Sbjct 1899221 GAAATGATTTCCCTTCAGGGGAAGACCAACTTCTTTGAGAAACGGGTCTCCGATTATTCC 1899280 Query 65157 AAAGC 65161 ||||| Sbjct 1899281 AAAGC 1899285 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 7/230 (3%) Strand=Plus/Minus Query 64666 AAGGCTGAATGGGCCATCCGGTGGATGA---ATCGTGGGTCGTCGTTTGGTCAGCGTCTC 64722 ||||| || ||||| | || ||||| ||||| | || | |||| | |||| | Sbjct 1896824 AAGGCGGACTGGGCACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGATTA 1896765 Query 64723 GCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGG 64782 | || || ||| |||||| || |||||||| || || || ||| || || |||||| Sbjct 1896764 GTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGG 1896705 Query 64783 CTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGAC 64842 | || ||||| ||||| ||||| || || | || || || || || ||| ||| ||| Sbjct 1896704 TTGAAGAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGAC 1896645 Query 64843 GAGGGGCTCCACCAAGAATTTGC--GGTTACCCTGTTCAGCCACCTCAAG 64890 ||||| | || || || || | || | |||||||||| |||||| Sbjct 1896644 GAGGGAATGCATACCGACTTCGCATGCTTGC--TGTTCAGCCATCTCAAG 1896597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310300195680