Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq6 111 1e-19
seq1 98.7 6e-16
>seq6
Length=2129081
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 34499 CCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAA 34558
|||||||||| || |||||| ||||||||||| || ||||| || || |||| || |
Sbjct 299927 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 299868
Query 34559 GTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGA 34618
| || || || || || || || ||||| ||||| || || | ||||||||||| ||
Sbjct 299867 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 299808
Query 34619 TCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677
|| || | || ||| || || ||||| |||||| || | || ||||| ||
Sbjct 299807 TC-TTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTT 299749
Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || ||||| ||||| || |||||||||
Sbjct 299748 CCAGTCAACGTCTTCACGAAGATCTGCATG 299719
Score = 96.9 bits (106), Expect = 2e-15
Identities = 140/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
|||||| || |||||||| || ||||| || || |||| || || || || || || ||
Sbjct 299626 CTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 299567
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634
|| |||||||| ||||| || || | |||||||||||| ||| || | || |||
Sbjct 299566 GATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTC-CTGAATCTTCGCCTTCACGT 299508
Query 34635 TA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693
|| || ||||| |||||| || | ||| ||||| || || || | || ||||
Sbjct 299507 TATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCAGTGAGGGTCTTCA 299448
Query 34694 CAAAAATCTGCATGT 34708
| || ||||||||||
Sbjct 299447 CGAAGATCTGCATGT 299433
Score = 86.0 bits (94), Expect = 4e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | || | ||| | ||| |||||| ||||||||||| || ||||| || ||
Sbjct 300219 AGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGG 300160
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| || || || || || || || || ||||| |||||||| || | ||||||
Sbjct 300159 CCGTCTTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCC 300100
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| ||| ||| || | || ||| || || ||||| ||| || || | ||
Sbjct 300099 TTATCT-TGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGT 300041
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| || || || | || || || ||||| |||||
Sbjct 300040 AATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 300002
>seq1
Length=3320137
Score = 98.7 bits (108), Expect = 6e-16
Identities = 96/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 34499 CCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAA 34558
||| |||||| |||||||| || |||||||| ||||| |||||||| || |||| || |
Sbjct 2299117 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2299058
Query 34559 GTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGA 34618
||| || || ||||| || | || || ||||||||||| | || ||||||||| |
Sbjct 2299057 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAA 2298998
Query 34619 TCTT 34622
||||
Sbjct 2298997 TCTT 2298994
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | |||||| | || | || || || |||||| || ||||| || || |||
Sbjct 2298908 CCGCCGCGAAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2298849
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | || || || || || || ||||| || | |||||||| ||||| ||
Sbjct 2298848 AGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGG 2298789
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658
| |||||||| || |||||| | ||| || || |||||||| ||| ||
Sbjct 2298788 ATGCCCTCCTTATCCTGGATCTTC-GCTTTGACATTATCGATTGTGTCGGACGACTCGAC 2298730
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| ||| || || || || || | ||||||||||| ||||||||
Sbjct 2298729 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 2298682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314729546299262
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |