Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq1 104 2e-17
seq6 100 2e-16
>seq1
Length=3320137
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| ||||| ||| || || || || || |||| ||| || || | || || |||||
Sbjct 2298884 TGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGC 2298825
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200
||||||||||| ||||| ||||| || | ||||||| | || ||| || ||| ||| ||
Sbjct 2298824 TTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGG-ATGCCCTCCTTATCCTGGATCTT 2298766
Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260
| ||||| | | | || ||| |||||| || |||| ||||| | || || ||
Sbjct 2298765 CGCTTTGACATTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGT 2298706
Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284
||| ||||| |||||||| |||||
Sbjct 2298705 CAGGGTTTTCACAAAGATCTGCAT 2298682
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152
||| || || ||||| ||||||| ||| || || | || ||||||||||| || || ||
Sbjct 2298306 CTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAA 2298247
Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212
||||||||||||||||||| || | | ||| |||||| || ||| |||| |
Sbjct 2298246 GATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATT 2298187
Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272
| | || || |||||||| || | ||||| | || ||||||| || || ||
Sbjct 2298186 GTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTTGAC 2298127
Query 39273 AAAGATTTGCAT 39284
||||| |||||
Sbjct 2298126 GAAGATCTGCAT 2298115
Score = 87.8 bits (96), Expect = 2e-12
Identities = 144/208 (69%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 39077 CCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAA 39136
||| ||| || ||||||||||| || || || ||||| | |||||| || |||| || |
Sbjct 2299117 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2299058
Query 39137 GCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGA 39196
|| ||||||||||| || || || |||||||| | || | || || ||||| |
Sbjct 2299057 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAA 2298998
Query 39197 TTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTC 39256
| ||| || | | | | ||| || ||||| || |||| |||||| | || |
Sbjct 2298997 TCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGC 2298938
Query 39257 CCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || || || || || ||||| |||||
Sbjct 2298937 CTGTGAGGGTCTTGACGAAGATCTGCAT 2298910
>seq6
Length=2129081
Score = 100 bits (110), Expect = 2e-16
Identities = 147/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 39077 CCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAA 39136
||||||| || || ||| || || || ||||| || | ||| || || |||| || |
Sbjct 299927 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 299868
Query 39137 GCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGA 39196
|||| |||||||| || || | ||||||||||| | ||| | || ||| |||||| ||
Sbjct 299867 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 299808
Query 39197 TTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTC 39256
| || |||| | | | ||| || |||||||| || | |||||| | ||||
Sbjct 299807 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 299748
Query 39257 CCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| |||| ||| || || ||||| |||||
Sbjct 299747 CAGTCAACGTCTTCACGAAGATCTGCAT 299720
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/211 (71%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 39075 CACCAAA-TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCAT 39133
|||||| || || |||||||| || || ||||| || || | || || || |||| |
Sbjct 300716 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCT 300657
Query 39134 CAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCA 39193
| ||||| |||||||| || || || ||||||||||||| || | | || ||||||
Sbjct 300656 CGAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 300597
Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
|| ||| |||| | | | ||| || ||||| || |||| |||||| | |
Sbjct 300596 GAATCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCT 300537
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| ||||| || || || |||||||| |||||
Sbjct 300536 TACCCGTGAGGGTCTTGACAAAGATCTGCAT 300506
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429545526708782
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |