Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq6 100 2e-16 >seq1 Length=3320137 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || || || || |||| ||| || || | || || ||||| Sbjct 2298884 TGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGC 2298825 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||||||||||| ||||| ||||| || | ||||||| | || ||| || ||| ||| || Sbjct 2298824 TTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGG-ATGCCCTCCTTATCCTGGATCTT 2298766 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 | ||||| | | | || ||| |||||| || |||| ||||| | || || || Sbjct 2298765 CGCTTTGACATTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGT 2298706 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 ||| ||||| |||||||| ||||| Sbjct 2298705 CAGGGTTTTCACAAAGATCTGCAT 2298682 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || ||||| ||||||| ||| || || | || ||||||||||| || || || Sbjct 2298306 CTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAA 2298247 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||||||||||||||||||| || | | ||| |||||| || ||| |||| | Sbjct 2298246 GATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATT 2298187 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | || || |||||||| || | ||||| | || ||||||| || || || Sbjct 2298186 GTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTTGAC 2298127 Query 39273 AAAGATTTGCAT 39284 ||||| ||||| Sbjct 2298126 GAAGATCTGCAT 2298115 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 39077 CCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAA 39136 ||| ||| || ||||||||||| || || || ||||| | |||||| || |||| || | Sbjct 2299117 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2299058 Query 39137 GCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGA 39196 || ||||||||||| || || || |||||||| | || | || || ||||| | Sbjct 2299057 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAA 2298998 Query 39197 TTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTC 39256 | ||| || | | | | ||| || ||||| || |||| |||||| | || | Sbjct 2298997 TCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGC 2298938 Query 39257 CCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || ||||| ||||| Sbjct 2298937 CTGTGAGGGTCTTGACGAAGATCTGCAT 2298910 >seq6 Length=2129081 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 39077 CCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAA 39136 ||||||| || || ||| || || || ||||| || | ||| || || |||| || | Sbjct 299927 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 299868 Query 39137 GCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGA 39196 |||| |||||||| || || | ||||||||||| | ||| | || ||| |||||| || Sbjct 299867 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 299808 Query 39197 TTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTC 39256 | || |||| | | | ||| || |||||||| || | |||||| | |||| Sbjct 299807 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 299748 Query 39257 CCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| ||| || || ||||| ||||| Sbjct 299747 CAGTCAACGTCTTCACGAAGATCTGCAT 299720 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 39075 CACCAAA-TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCAT 39133 |||||| || || |||||||| || || ||||| || || | || || || |||| | Sbjct 300716 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCT 300657 Query 39134 CAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCA 39193 | ||||| |||||||| || || || ||||||||||||| || | | || |||||| Sbjct 300656 CGAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 300597 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||| |||| | | | ||| || ||||| || |||| |||||| | | Sbjct 300596 GAATCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCT 300537 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || || || |||||||| ||||| Sbjct 300536 TACCCGTGAGGGTCTTGACAAAGATCTGCAT 300506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545526708782