Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq1 163 7e-35
seq6 132 1e-25
>seq1
Length=3320137
Score = 163 bits (180), Expect = 7e-35
Identities = 161/208 (77%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565
||||||| | ||| || ||||| || | ||||||||||| | ||||| |||||| || |
Sbjct 2298604 CAAGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCA 2298545
Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625
|||||| ||||||||||| | ||||| |||||||| ||||| ||||||||||| || |
Sbjct 2298544 ACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAA 2298485
Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685
|||| |||||| || || ||||| || | || || || | ||||||||||| |
Sbjct 2298484 TCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCC 2298425
Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||||||| |||| ||| | |||||
Sbjct 2298424 CCGTCAAAGTCTTTACGAAAATCTGCAT 2298397
Score = 154 bits (170), Expect = 4e-32
Identities = 159/208 (76%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565
||||||| || || || || || |||| ||||||||||| | || | |||||| || |
Sbjct 2298322 CAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAA 2298263
Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625
|||| || |||||||||||||| || || |||||||| || ||||| |||||||| || |
Sbjct 2298262 GCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAA 2298203
Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685
|||| ||| ||| ||||| ||||| || | ||||| || | ||||| |||||||
Sbjct 2298202 TCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGC 2298143
Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||||| || || | ||| | |||||
Sbjct 2298142 CCGTCAATGTCTTGACGAAGATCTGCAT 2298115
Score = 120 bits (132), Expect = 7e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | ||||||||||| || || || || || |||| ||||| |||| | ||
Sbjct 2298902 CGAAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTC 2298843
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||||| || |||||||| || || || ||||| || ||||| || || || || ||
Sbjct 2298842 CGGCCATCCTCGAGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGGATGCCC 2298783
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||| || |||||||| || ||| ||||| ||||| || | || || || ||
Sbjct 2298782 TCCTTATCCTGGATCTTCGCTTTGACATTATCGATTGTGTCGGACGACTCGACCTCCAAG 2298723
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| |||||||| |||| |||||
Sbjct 2298722 GTGATGGTCTTGCCAGTCAGGGTTTT 2298697
Score = 111 bits (122), Expect = 4e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567
|| ||||| ||| ||||| || | |||||||| | | || | || || || |
Sbjct 2299115 AGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAAT 2299056
Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627
||||| || || || || || ||||| ||||| ||||| || |||||||||||||| |||
Sbjct 2299055 TGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATC 2298996
Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687
|| ||||||| ||||| ||||| || | || || || |||||||| ||||||||
Sbjct 2298995 TTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGCCT 2298936
Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713
|| | || || | ||| | |||||
Sbjct 2298935 GTGAGGGTCTTGACGAAGATCTGCAT 2298910
Score = 89.7 bits (98), Expect = 1e-12
Identities = 90/117 (77%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | || ||| || || ||||| ||||| || |||| ||||| || | ||| ||
Sbjct 2298108 ACGGAGGCGCAAGACGAGATGAAGAGTCGATTCCTTCTGGATGTTGTAGTCAGACAATGT 2298049
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608
| ||||| || ||||| || |||||||| || || |||||||||||||| |||||
Sbjct 2298048 ACGGCCATCCTCGAGCTGTTTTCCAGCGAAAATGAGACGTTGTTGGTCGGGAGGAAT 2297992
>seq6
Length=2129081
Score = 132 bits (146), Expect = 1e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567
|| || ||||| || || || |||| |||||| || | | ||| | ||||| || ||
Sbjct 300435 AGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGT 300376
Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627
||||| |||||||| || || || || ||||| ||||| ||||| |||||||| || |||
Sbjct 300375 TGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATC 300316
Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687
||| |||||| ||||| ||||| || | || || || | |||||||||||||||
Sbjct 300315 TTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCA 300256
Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713
|||| || || | ||| | |||||
Sbjct 300255 GTCAGGGTCTTGACGAAGATCTGCAT 300230
Score = 116 bits (128), Expect = 9e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || || | ||||| || || || | || || |||| | ||| | || |||
Sbjct 300213 AGGACGAGATGCAAGGTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCT 300154
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| | || || ||||| || ||||| || ||||| |||
Sbjct 300153 TCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCT 300094
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| |||||| ||||| ||||| || | || || || | ||| ||||||
Sbjct 300093 TGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTC 300034
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||||| | || || | ||| | ||||||
Sbjct 300033 TTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 300002
Score = 116 bits (128), Expect = 9e-21
Identities = 136/184 (74%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565
||||||| || ||| || || |||| |||||| || | || || | || || || |
Sbjct 300713 CAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGA 300654
Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625
||||||| || ||||| || || || || |||||||| ||||| ||||||||||| || |
Sbjct 300653 GCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAA 300594
Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685
|||| ||| ||| ||||| ||||| || | || || || | |||||| ||||| |
Sbjct 300593 TCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTAC 300534
Query 225686 CCGT 225689
||||
Sbjct 300533 CCGT 300530
Score = 100 bits (110), Expect = 7e-16
Identities = 117/158 (74%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
|| || || |||||||| || |||||||| | || || ||||| || || || || |||
Sbjct 299877 CCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCC 299818
Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675
||||| |||||||| ||| || ||||| ||||| || | ||||| || | ||||
Sbjct 299817 TTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTG 299758
Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||||| || ||||| || || | ||| | |||||
Sbjct 299757 ATCGTCTTTCCAGTCAACGTCTTCACGAAGATCTGCAT 299720
Score = 96.9 bits (106), Expect = 8e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567
|| || || || || || || |||| || || || | | || | || || || |||
Sbjct 299640 AGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGC 299581
Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627
||||| || |||||||| | || || |||||||| || || || |||||||| || |||
Sbjct 299580 TGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATC 299521
Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687
|| |||||| ||||||||||| || | ||||| || | ||||||||||| ||
Sbjct 299520 TTCGCCTTCACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCA 299461
Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713
|| | || || | ||| | |||||
Sbjct 299460 GTGAGGGTCTTCACGAAGATCTGCAT 299435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192530986089716
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |