Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3 147 2e-30 >seq3 Length=3024150 Score = 147 bits (162), Expect = 2e-30 Identities = 375/569 (66%), Gaps = 9/569 (2%) Strand=Plus/Minus Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAA 4598 ||||| | ||| |||||||| ||||| |||||||| | |||||||||||||||||| Sbjct 1898950 AACAAGAGACAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1898891 Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 || ||||| || ||||| | ||||| || || ||||| || || | ||||| || || Sbjct 1898890 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1898831 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT 4718 || ||||| || |||||||| || || |||||||| || | | | |||| | Sbjct 1898830 GAGAAGAAGATCCCTTCTACCGCCGCGAACGCTACCAACCTCGTGGCAAACGTCGACCGT 1898771 Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTAT 4778 | ||| ||||| | | ||||| | | || | ||| ||||| || || || | Sbjct 1898770 TGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCG 1898711 Query 4779 ATAGCGTTAAA---TAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGT 4835 || | || || | || | | | | ||| || || || || || || Sbjct 1898710 ATCGAATTGAAGAGGAGGCCACGCTGCTGA---GAGTCAGAGATGTAGGTATCGATGAGG 1898654 Query 4836 AGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTA 4895 || || |||| || || || ||||| || || |||||||| ||||| || | Sbjct 1898653 AGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGG 1898594 Query 4896 GCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCG 4955 |||| | |||| |||||| | |||| | || || | || ||||| || |||||| Sbjct 1898593 ACTTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCG 1898534 Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT 5015 || || |||||||| |||| |||| ||||| || | |||||| || || Sbjct 1898533 TCGGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTGTCATTCAGG 1898474 Query 5016 TT---TTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGAC 5072 || ||||||| | | |||||| | | ||| | ||||| ||||||||||| Sbjct 1898473 TTATCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAA 1898414 Query 5073 GCTTCCGCTTTTTTGTACATAGACCAAAT 5101 || | ||||| |||||||| |||||| Sbjct 1898413 GCCTGGGCTTTCTTGTACATCTGCCAAAT 1898385 Score = 131 bits (144), Expect = 1e-25 Identities = 367/559 (66%), Gaps = 7/559 (1%) Strand=Plus/Plus Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAA 4598 |||| || || || || || ||||| || ||||| | || || ||||| || || Sbjct 1896610 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1896669 Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 || || | ||| ||||| | || | ||| || | ||| || || | ||| || || || Sbjct 1896670 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1896729 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT 4718 || ||||| ||||| || || ||||| || || |||||||| | || | | | Sbjct 1896730 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1896789 Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTAT 4778 || ||||| || |||||||| || || | || || || ||||| || | Sbjct 1896790 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1896849 Query 4779 ATAGCGTTAAATAATTTACTTT--TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTA 4836 | ||| | || || |||| || | | || ||||| | ||||| || || || | Sbjct 1896850 ACAGCATCGAA-AAGGTACTCGCGTTGCTTAGGGTCCTTGA-TGTAAGTATCGATAAGAA 1896907 Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896 || || | || || |||||||| || ||| || || ||||| ||||| | | Sbjct 1896908 GGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCG 1896967 Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGT 4956 | || | | ||||| ||||| | || | || || | ||| ||||| || || || | Sbjct 1896968 CCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCAT 1897027 Query 4957 CACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAA--- 5013 || ||| ||||||||||| | ||||| || | ||||| | || | |||| Sbjct 1897028 CAGAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAAGGC 1897087 Query 5014 GTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACG 5073 | || ||||||| | | | |||||| | | || | ||||| ||||||| || |||| Sbjct 1897088 GGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACG 1897147 Query 5074 CTTCCGCTTTTTTGTACAT 5092 |||| |||||||||||||| Sbjct 1897148 CTTCAGCTTTTTTGTACAT 1897166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049527134662