Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11- 03] 14 sequences; 27,530,324 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3 174 2e-38 >seq3 Length=3024150 Score = 174 bits (192), Expect = 2e-38 Identities = 380/566 (67%), Gaps = 6/566 (1%) Strand=Plus/Minus Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 |||| | ||| |||||||| ||| | ||||| || | |||||| | |||||||||| Sbjct 1898950 AACAAGAGACAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1898891 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 || || | |||||||| || || || || || ||||| || || | || |||||||| Sbjct 1898890 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1898831 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGG--CAT 46798 || ||||| || |||||||| |||||||| || || | ||| | | | | | | Sbjct 1898830 GAGAAGAAGATCCCTTCTACCGCCGCGAACGCTACCAACCTCGTGGCAAACGTCGACCGT 1898771 Query 46799 CATTATGA-ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857 | || |||||||| | ||||| || | ||| | ||| || || || || || || Sbjct 1898770 TGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCG 1898711 Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGA 46917 || | ||| ||||| | | | | | || | || ||||| || | ||| Sbjct 1898710 ATCGAATTGAAGAGGAGGCCACGCTGCTGAGAGTCAGAGATGTAGGTATCGATGAGGAGA 1898651 Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977 || |||| || ||||||||||| || || |||||||| |||||||| | || Sbjct 1898650 GAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGGACT 1898591 Query 46978 TCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCA 47037 |||| ||||| || | |||| || || || |||||| || || || || || Sbjct 1898590 TCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCG 1898531 Query 47038 CTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTA 47097 ||| ||||||||||||| |||| | || |||| ||| | | | |||| ||| Sbjct 1898530 GAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTGTCATTCAGGTTA 1898471 Query 47098 ---TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCC 47154 |||||||| ||||||||| || ||||| | ||||| | ||||| || || ||| Sbjct 1898470 TCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGCC 1898411 Query 47155 TCTGCTTTTTTATACATATTCCATAT 47180 | ||||| || ||||| | ||| || Sbjct 1898410 TGGGCTTTCTTGTACATCTGCCAAAT 1898385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934275236480