Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457995.1_202015-11-
03] 14 sequences; 27,530,324 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq1 145 2e-29
seq6 105 2e-17
>seq1
Length=3320137
Score = 145 bits (160), Expect = 2e-29
Identities = 157/208 (75%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||| |||||||| || ||||| |||||||||| | || | |||||| || |
Sbjct 2298322 CAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAA 2298263
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| ||| || ||||||||||| | ||||||||| | | ||| || ||||| || ||||
Sbjct 2298262 GCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAA 2298203
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || |||||| | || | |||| ||| ||| ||||||||||| || || ||||
Sbjct 2298202 TCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGC 2298143
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|||| | ||||| ||||||| ||||||
Sbjct 2298142 CCGTCAATGTCTTGACGAAGATCTGCAT 2298115
Score = 113 bits (124), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 4/210 (2%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || | |||||||||||| || || |||||||||| | ||||| |||||| || |
Sbjct 2298604 CAAGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCA 2298545
Query 151957 --GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
||||| || |||||||| | || |||||||| | | || |||||||| || ||
Sbjct 2298544 ACTGCTTT--CCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTG 2298487
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074
||| || || || | || | |||| ||| ||| || || ||||| || || ||
Sbjct 2298486 AATCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTT 2298427
Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| | |||||| ||||| | ||||||
Sbjct 2298426 CCCCGTCAAAGTCTTTACGAAAATCTGCAT 2298397
Score = 100 bits (110), Expect = 7e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||||||||| ||||| || ||||| || ||||||||||| |||| | || | |||||
Sbjct 2298894 GAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATC 2298835
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || || || ||||| | ||| || |||| | ||| || ||||| ||
Sbjct 2298834 CTCGAGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATC 2298775
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || ||||||| | || | |||| || ||| || || | || || ||
Sbjct 2298774 CTGGATCTTCGCTTTGACATTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGT 2298715
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || || || ||||| |||| ||||||
Sbjct 2298714 CTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 2298682
Score = 96.9 bits (106), Expect = 8e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958
||||| || || |||||| || ||||||||||| | | || | || || || |
Sbjct 2299115 AGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAAT 2299056
Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018
|| || || || || || | |||||||||| || ||| |||||||| ||||||||
Sbjct 2299055 TGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATC 2298996
Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078
|| || ||| | || | |||| ||| |||||| || | || || || |||||
Sbjct 2298995 TTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGCCT 2298936
Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| ||||| ||||||| ||||||
Sbjct 2298935 GTGAGGGTCTTGACGAAGATCTGCAT 2298910
>seq6
Length=2129081
Score = 105 bits (116), Expect = 2e-17
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958
||||||||||| ||||| || ||||| ||||| || | | ||| | ||||| || ||
Sbjct 300435 AGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGT 300376
Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018
|| || ||||| || || | ||||||||| | || ||| || ||||| || |||||
Sbjct 300375 TGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATC 300316
Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078
||| || || | || | |||| || ||| || || || || || || |||||
Sbjct 300315 TTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCA 300256
Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || ||||| ||||||| ||||||
Sbjct 300255 GTCAGGGTCTTGACGAAGATCTGCAT 300230
Score = 104 bits (114), Expect = 5e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| ||||| | || ||||| || || ||||| || |||| | ||| | || |||
Sbjct 300213 AGGACGAGATGCAAGGTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCT 300154
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || |||||||| | | ||||||||||| | || || ||||| |||
Sbjct 300153 TCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCT 300094
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| || || || | || | |||| ||| ||| || || || ||||| ||
Sbjct 300093 TGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTC 300034
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||||||||| ||||| ||||| | |||||
Sbjct 300033 TTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 300002
Score = 102 bits (112), Expect = 2e-16
Identities = 146/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958
|||||||| || ||||| || |||||||| || || | | || | || || || ||
Sbjct 299640 AGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGC 299581
Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018
|| || |||||||| | | ||||||||| | | |||||| ||||| || |||||
Sbjct 299580 TGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATC 299521
Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078
|| || || | || | | |||| ||| ||| || || || || || || || ||
Sbjct 299520 TTCGCCTTCACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCA 299461
Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| ||||||||||||| ||||||
Sbjct 299460 GTGAGGGTCTTCACGAAGATCTGCAT 299435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153820593033394
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |